View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13006_low_26 (Length: 384)
Name: NF13006_low_26
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13006_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 11 - 362
Target Start/End: Complemental strand, 11939599 - 11939248
Alignment:
| Q |
11 |
cataggaagattggaacacaagcaaagtttcagacacatggaggaaacctggtataggtatgctaaaatgtaatactgatgtgaaactgttcattgatta |
110 |
Q |
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| T |
11939599 |
cataggaagattggaacacaagcaaagtttcagacacatggaggaaacccggtataggtatgctaaaatgtaatactgatgtgaaactgttcattgatta |
11939500 |
T |
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| Q |
111 |
gaactgcttcgtgtatggtttatgtctgaagaacgatggcggtgaatttctccaggcgcggtttgctcatttcgcagggaaatccatgagccgctgaagc |
210 |
Q |
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| T |
11939499 |
gaactgcttcgtgtatggtttacgtctgaagaacgatggcggtgaatttctccaggcgcggtgtgctcatttcgcagggaaatccatgagctgctgaagc |
11939400 |
T |
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| Q |
211 |
cgaggcttgtggccagctgtgttatggctgcatgaacaaaactttaataattcagtagtgctatatggtgcgaagacttctgtaattgaacaagacttca |
310 |
Q |
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| T |
11939399 |
cgaggcttgtggccagctctgttatggctgcatgaacaaaactttaataattcagtagtgctatatggtgcgaagacttcagtaattgaacaagacttca |
11939300 |
T |
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| Q |
311 |
gtaattttgtcataatgagcttggcattgtagttttgaacaatcttagggta |
362 |
Q |
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| T |
11939299 |
gtaattttgtcataatgagcttggcattgtagttttgaacaatcttagggta |
11939248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 24235885 - 24235947
Alignment:
| Q |
66 |
aggtatgctaaaatgtaatactgatgtgaaactgttcattgattagaactgcttcgtgtatgg |
128 |
Q |
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| T |
24235885 |
aggtatgctaaaatgtaattctgatgcggcactgttcattgatcagaactgcttcgggtatgg |
24235947 |
T |
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