View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13006_low_27 (Length: 381)
Name: NF13006_low_27
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13006_low_27 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 373
Target Start/End: Complemental strand, 4244570 - 4244215
Alignment:
| Q |
18 |
ctttcatgttatattctaccagaaaaacaaaaatcacacctaccccatctttcaccgtggttgatttaagttcacctcactcttttaccattgatcaaga |
117 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4244570 |
ctttcatgtcatattctaccaaaaaaacaaaaatcactcctaccccatctttcaccgtggttgatttaagttcacctcactcttttaccattgatcaaga |
4244471 |
T |
|
| Q |
118 |
aactctcatagatattgtcaaagagaaaagcattgatacacttcagaaacatggtggagttgaaggtgttgcttcatcacttaaaaccaacgttgagttt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4244470 |
aactctcatagatattgtcaaagagaaaagcattgatacacttcagaaacatggtggagttgaaggtgttgcttcatcacttaaaaccaacgttgagttt |
4244371 |
T |
|
| Q |
218 |
ggtatcaaaagtcatgatgatgattttcatgacatttcaattagacaacaagtgtttggttccaacacttacaaaaaaccaccttctaaaagtttctttc |
317 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4244370 |
ggtatcagaagtcatgatgatgattttcatgacatttcaattagacaacaagtgtttggttccaacacttacaaaaaaccaccttctaaaagtttctttc |
4244271 |
T |
|
| Q |
318 |
attttgttgttgaagcttttaaggatgtaacaattcttattcttttggtctgtgct |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4244270 |
attttgttgttgaagcttttaaggatgtaacaattcttattcttttggtttgtgct |
4244215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 373
Target Start/End: Complemental strand, 6187629 - 6187271
Alignment:
| Q |
18 |
ctttcatgttatattctaccagaaaaacaaaaatcacacctaccccatctttcaccgtggttgatttaagttcacctcactcttttaccattgatcaaga |
117 |
Q |
| |
|
||||||||| | ||| ||||| ||| |||||||||||||||| ||||||||||||||||||||||||| || ||| ||||||||||||||||||||||| |
|
|
| T |
6187629 |
ctttcatgtcacattttaccaagaaaccaaaaatcacacctactccatctttcaccgtggttgatttaaatttaccacactcttttaccattgatcaaga |
6187530 |
T |
|
| Q |
118 |
aactctcatagatattgtcaaagagaaaagcattgatacacttcagaaacatggtggagttgaaggtgttgcttcatcacttaaaaccaacgttgagttt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6187529 |
aactctcatagatattgtcaaagagaaaaacattgatacacttcaaaatcatggtggagttgaaggtgttgcttcatcacttaaaaccaacattgagttt |
6187430 |
T |
|
| Q |
218 |
ggtatcaaaagtcatga---tgatgattttcatgacatttcaattagacaacaagtgtttggttccaacacttacaaaaaaccaccttctaaaagtttct |
314 |
Q |
| |
|
|||||||||||| |||| | |||||||| | || ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
6187429 |
ggtatcaaaagtgatgatactaatgattttgaagatattgcaattaggaaacaagtgtttggttccaacacttacaaaaaaccaccttctaagagtttca |
6187330 |
T |
|
| Q |
315 |
ttcattttgttgttgaagcttttaaggatgtaacaattcttattcttttggtctgtgct |
373 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||| || |||||||| |||||| |
|
|
| T |
6187329 |
ttcattttgttattgaagcttttaaggatgttacaattctaatccttttggtttgtgct |
6187271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University