View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13006_low_28 (Length: 376)
Name: NF13006_low_28
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13006_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 20 - 367
Target Start/End: Original strand, 42379778 - 42380126
Alignment:
| Q |
20 |
cgtgtatgttactgtcgtgttctttggtgtggataaaaaccataataacaagagaagggtcatgtgtctctcatcttatcttcttttctgggtacgtttt |
119 |
Q |
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| T |
42379778 |
cgtgtgtgttactgtcgagttctttggtgtggataaaaaccataataacaagagaagggtcatgtgtctctcatcttatcttcttttctgggtacgtttt |
42379877 |
T |
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| Q |
120 |
ctcatcgctcaaattcctgcagagggtatttaaatcaatgttctcttattctcatannnnnnnccctttataataataattagatgatttatcaagagga |
219 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42379878 |
ctcatcgctcaaattcctgtagagggtatttaaatcaatgttctcttattctcatatttttttccctttataataataattagatgatttatcaagagga |
42379977 |
T |
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| Q |
220 |
gcaaaggttgccnnnnnnnnnnnnnnnnnnnnnctttgttgacttgatttcaaatgcttataattcttta-----tactttatatctgaatgtggtttaa |
314 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
42379978 |
gcaaaggttgcc----tttatttattattttttctttgttgacttgatttcaaatgcttataattctttatactgtactttatatctgaatgtggtttaa |
42380073 |
T |
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| Q |
315 |
ataaactgtttctgaacagtgatacttaattttgacttttctactgtctctgc |
367 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42380074 |
ataaactgtttctgaatagtgatacttaattttgacttttctactgtctctgc |
42380126 |
T |
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