View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13006_low_3 (Length: 712)

Name: NF13006_low_3
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13006_low_3
NF13006_low_3
[»] chr5 (4 HSPs)
chr5 (10-710)||(40516664-40517364)
chr5 (121-169)||(42910475-42910523)
chr5 (127-186)||(5173786-5173845)
chr5 (126-167)||(8825465-8825506)
[»] chr7 (4 HSPs)
chr7 (316-384)||(39900868-39900936)
chr7 (103-171)||(39887629-39887697)
chr7 (122-167)||(36729584-36729629)
chr7 (121-167)||(47430762-47430808)
[»] chr1 (3 HSPs)
chr1 (127-194)||(43049436-43049503)
chr1 (108-167)||(38577926-38577986)
chr1 (127-169)||(13697233-13697275)
[»] scaffold0020 (1 HSPs)
scaffold0020 (121-158)||(172529-172566)
[»] chr3 (1 HSPs)
chr3 (103-167)||(4030229-4030293)
[»] chr8 (2 HSPs)
chr8 (120-167)||(3631174-3631221)
chr8 (121-154)||(28431397-28431430)
[»] chr4 (3 HSPs)
chr4 (109-167)||(30746107-30746165)
chr4 (121-168)||(32028235-32028282)
chr4 (126-159)||(36114915-36114948)
[»] chr2 (3 HSPs)
chr2 (127-167)||(16244926-16244966)
chr2 (120-168)||(36322714-36322762)
chr2 (120-163)||(9436122-9436165)


Alignment Details
Target: chr5 (Bit Score: 593; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 10 - 710
Target Start/End: Original strand, 40516664 - 40517364
Alignment:
Q  10 catcatcatatgtctcttgagctcaggactttcactcatcaaaattattgtgcaacaagcaagtcactcatcaaaactattgtgcaatatgtgtgtcgga 109  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||| ||||||||| ||    
T  40516664 catcatcatatgtctcttgagctgaggactttcactcatcaaaattattgtgcaacaagcaattcactcatcaaaattattgttcaacatgtgtgtcaga 40516763  T
Q  110 atcaaggtggcccaccatgatttttcaaaagctacactttgtagcttctgtaaaatcacagtaggttgccgtgattcaaacacacgcacattgataccaa 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||| |||||||||    
T  40516764 atcaaggtggcccaccatgatttttcaaaagctacactttgtagcttctataaaatcatagtaggttgtcgtgattcaaacacacgcacagtgataccaa 40516863  T
Q  210 atatatatttaatgctctgtaagtagatagattttcactactctatttgattgaattaaaacagtaagtttgaggtttataacgaaacatttgagcatag 309  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  40516864 atatatacttaatgctctgcaagtagatagattttcactactctatttgattgaattaaaacagtaaatttgaggtttataacgaaacatttgagcatag 40516963  T
Q  310 tactgctcccatgcatgatactctacattgcatcatccacattttcatcacgtaatgatggttaagactccacataataaacaatatataaactgcacaa 409  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40516964 tactggtcccatgcatgatactctacattgcatcatccacattttcatcacgtaatgatggttaagactccacataataaacaatatataaactgcacaa 40517063  T
Q  410 ggcaagcgggtaataaactgcgccgccaggcctttttggatggtatagtacttgcattcgggttatccaaatctcaacaattccaactaatgatactcaa 509  Q
    ||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40517064 ggcaagcaggtaataaactgcgccgtcaggcctttttggatggcatagtacttgcattcgggttatccaaatctcaacaattccaactaatgatactcaa 40517163  T
Q  510 tactcttggcagaagaccgggaaacaatgacttgccaataaaaaatgctgaaactgtaggcttgagcttacatttgcagtgttattttttcccacttgca 609  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  40517164 tactcttggcagaagaccgggaaacaatgacttgcgcataaaaaatgctgaaactgtgggcatgagcttacatttgcagtgttattttttcccacttgca 40517263  T
Q  610 tggctacacattaattgtcattccgatcctaatcttcctctcnnnnnnnncttcttccaagttttaacaacgtgcactccatcatgggtgtaattgcgag 709  Q
    ||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40517264 tggctacacattaattgtcattccgatcctaatcttcctctcttttttttcttcttccaagttttaacaacgtgcactccatcatgggtgtaattgcgag 40517363  T
Q  710 a 710  Q
    |    
T  40517364 a 40517364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 42910523 - 42910475
Alignment:
Q  121 ccaccatgatttttcaaaagctacactttgtagcttctgtaaaatcaca 169  Q
    ||||| |||||||||||||||| |||||||||||||||  |||||||||    
T  42910523 ccaccgtgatttttcaaaagctgcactttgtagcttctacaaaatcaca 42910475  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 5173845 - 5173786
Alignment:
Q  127 tgatttttcaaaagctacactttgtagcttctgtaaaatcacagtaggttgccgtgattc 186  Q
    |||||||| |||| ||||| |||||||||||||||||||||| |||| |  |||||||||    
T  5173845 tgatttttaaaaatctacattttgtagcttctgtaaaatcacggtagatcaccgtgattc 5173786  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 167
Target Start/End: Original strand, 8825465 - 8825506
Alignment:
Q  126 atgatttttcaaaagctacactttgtagcttctgtaaaatca 167  Q
    ||||||||| |||||||||| |||||| ||||||||||||||    
T  8825465 atgattttttaaaagctacattttgtaacttctgtaaaatca 8825506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 8e-26; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 316 - 384
Target Start/End: Complemental strand, 39900936 - 39900868
Alignment:
Q  316 tcccatgcatgatactctacattgcatcatccacattttcatcacgtaatgatggttaagactccacat 384  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  39900936 tcccatgcatgatactctacattgcattattcacattttcatcacgtaatgatggttaagactccacat 39900868  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 39887629 - 39887697
Alignment:
Q  103 tgtcggaatcaaggtggcccaccatgatttttcaaaagctacactttgtagcttctgtaaaatcacagt 171  Q
    |||| |||||| || | |||||| ||||||| ||||||||||||||||||||||||| |||||||||||    
T  39887629 tgtcagaatcatggcgacccaccgtgattttccaaaagctacactttgtagcttctgcaaaatcacagt 39887697  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 36729584 - 36729629
Alignment:
Q  122 caccatgatttttcaaaagctacactttgtagcttctgtaaaatca 167  Q
    |||||||||||| ||||||||||||||||||| || ||||||||||    
T  36729584 caccatgattttgcaaaagctacactttgtaggttttgtaaaatca 36729629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 121 - 167
Target Start/End: Complemental strand, 47430808 - 47430762
Alignment:
Q  121 ccaccatgatttttcaaaagctacactttgtagcttctgtaaaatca 167  Q
    |||| ||||||||| ||||||||||||| |||||||||| |||||||    
T  47430808 ccacaatgatttttaaaaagctacacttggtagcttctgcaaaatca 47430762  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 43049436 - 43049503
Alignment:
Q  127 tgatttttcaaaagctacactttgtagcttctgtaaaatcacagtaggttgccgtgattcaaacacac 194  Q
    |||||||| |||||||||||||||||||||||| |||||||  || ||| |||||||||||| |||||    
T  43049436 tgattttttaaaagctacactttgtagcttctgcaaaatcatggtgggtcgccgtgattcaagcacac 43049503  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 108 - 167
Target Start/End: Complemental strand, 38577986 - 38577926
Alignment:
Q  108 gaatcaaggtggcccaccatgatttttcaaaagctacactttgtagc-ttctgtaaaatca 167  Q
    |||||| | ||| ||||| ||||||| |||||||||||||||||||| |||||||||||||    
T  38577986 gaatcacgttggtccaccttgattttccaaaagctacactttgtagctttctgtaaaatca 38577926  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 13697233 - 13697275
Alignment:
Q  127 tgatttttcaaaagctacactttgtagcttctgtaaaatcaca 169  Q
    ||||||||||||||||||||| ||||||||| | |||||||||    
T  13697233 tgatttttcaaaagctacactgtgtagcttcagcaaaatcaca 13697275  T

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Target: scaffold0020 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 172529 - 172566
Alignment:
Q  121 ccaccatgatttttcaaaagctacactttgtagcttct 158  Q
    ||||||||||||||||||||||||||||||||||||||    
T  172529 ccaccatgatttttcaaaagctacactttgtagcttct 172566  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 167
Target Start/End: Complemental strand, 4030293 - 4030229
Alignment:
Q  103 tgtcggaatcaaggtggcccaccatgatttttcaaaagctacactttgtagcttctgtaaaatca 167  Q
    |||| |||||| ||||| ||||  | ||||||||||||||||||||||||||||||| |||||||    
T  4030293 tgtcagaatcacggtggtccactgtaatttttcaaaagctacactttgtagcttctgcaaaatca 4030229  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 3631174 - 3631221
Alignment:
Q  120 cccaccatgatttttcaaaagctacactttgtagcttctgtaaaatca 167  Q
    |||| |||||||||||||||| ||||||||||| ||||||||||||||    
T  3631174 cccatcatgatttttcaaaagatacactttgtaacttctgtaaaatca 3631221  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 154
Target Start/End: Original strand, 28431397 - 28431430
Alignment:
Q  121 ccaccatgatttttcaaaagctacactttgtagc 154  Q
    ||||||||||||||||||||||||||||| ||||    
T  28431397 ccaccatgatttttcaaaagctacactttatagc 28431430  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 167
Target Start/End: Complemental strand, 30746165 - 30746107
Alignment:
Q  109 aatcaaggtggcccaccatgatttttcaaaagctacactttgtagcttctgtaaaatca 167  Q
    ||||||| || |||||||||||||||||||| | ||||||||||| ||||| |||||||    
T  30746165 aatcaagatgacccaccatgatttttcaaaaacaacactttgtaggttctgcaaaatca 30746107  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 168
Target Start/End: Original strand, 32028235 - 32028282
Alignment:
Q  121 ccaccatgatttttcaaaagctacactttgtagcttctgtaaaatcac 168  Q
    |||| |||||||||||||||||||||||| |||||| || ||||||||    
T  32028235 ccactatgatttttcaaaagctacactttatagcttatgcaaaatcac 32028282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 159
Target Start/End: Original strand, 36114915 - 36114948
Alignment:
Q  126 atgatttttcaaaagctacactttgtagcttctg 159  Q
    |||||||||||||||||||||||| |||||||||    
T  36114915 atgatttttcaaaagctacactttatagcttctg 36114948  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 16244966 - 16244926
Alignment:
Q  127 tgatttttcaaaagctacactttgtagcttctgtaaaatca 167  Q
    ||||||| ||||||||||||| |||||||||||||||||||    
T  16244966 tgattttccaaaagctacactctgtagcttctgtaaaatca 16244926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 36322714 - 36322762
Alignment:
Q  120 cccaccatgatttttcaaaagctacactttgtagcttctgtaaaatcac 168  Q
    |||||| ||||||||||||| ||||||||||||||||||  ||||||||    
T  36322714 cccaccgtgatttttcaaaaactacactttgtagcttctacaaaatcac 36322762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 163
Target Start/End: Complemental strand, 9436165 - 9436122
Alignment:
Q  120 cccaccatgatttttcaaaagctacactttgtagcttctgtaaa 163  Q
    ||||| |||||||||||||| ||||||||||||| |||||||||    
T  9436165 cccactatgatttttcaaaaactacactttgtagtttctgtaaa 9436122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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