View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13006_low_30 (Length: 368)
Name: NF13006_low_30
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13006_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 55245566 - 55245768
Alignment:
| Q |
1 |
ttgtgtagtaaatgaattaatattgttcgtacttgtgccaacatagtaacataataatgcacctctttagtatgtagagcctggacctctcttctttagc |
100 |
Q |
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| T |
55245566 |
ttgtgtagtaaatgaattaatattgttcgtacttgtgccaacatagtaacataataatgcacctctttagtatgtagagcctggacctctcttctttagc |
55245665 |
T |
|
| Q |
101 |
tctcttgaggaacctcttcttcaagcttgaattagccagctcctcacaattactagggtatgtttttgaataagagttatccatgtagtgctatagtgta |
200 |
Q |
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| T |
55245666 |
tctcttgaggaacctcttcttcaagcttgaattagccagctcctcacaattactagggtatgtttttgaataagagttatccatgtagtgctatagtgta |
55245765 |
T |
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| Q |
201 |
att |
203 |
Q |
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||| |
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| T |
55245766 |
att |
55245768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 272 - 361
Target Start/End: Original strand, 55245833 - 55245922
Alignment:
| Q |
272 |
gtagtaattggggtatgtatgggcaacagtgtcgagtagctagcattgtggtccttggtacgatctgactcatactctgtgtctgtgctc |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
55245833 |
gtagtaattggggtatgtatgggcaacagtgtcgagtagctagcattgtggtccttggtacgatctgactcatactctgtgtctgggctc |
55245922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 8269967 - 8270071
Alignment:
| Q |
27 |
tcgtacttgtgccaacatagtaacataataatgcacctctttagtatgtagagcctggacctctcttctttagctctcttgaggaacctcttcttcaagc |
126 |
Q |
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| T |
8269967 |
tcgtacttttgccaacatagtaatataataatgcacctctttaatatatagagcctagacctctgttcctttgccttgttaaggaacctcttcttcaagc |
8270066 |
T |
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| Q |
127 |
ttgaa |
131 |
Q |
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||||| |
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| T |
8270067 |
ttgaa |
8270071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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