View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13006_low_33 (Length: 358)
Name: NF13006_low_33
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13006_low_33 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 14 - 358
Target Start/End: Complemental strand, 48486143 - 48485799
Alignment:
| Q |
14 |
taattctataattttatcgtgtgaataaattatgcaggatacaatatcttgttatggctgtggtttgacgttgccatgcaaaaccatgaagaagattaag |
113 |
Q |
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| T |
48486143 |
taattctataattttatcgtgtgaataaattatgcaggatacaatatcttgttatggctgtggtttgacgttgccatgcaaaaccatgaagaagattaag |
48486044 |
T |
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| Q |
114 |
gattcaagctgtgctcctcagcattattgtaaatcttgtgcaaaggttcagagaatcactcatttaagatgtctttatttccttgccttaatttatctat |
213 |
Q |
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| T |
48486043 |
gattcaagctgtgctcctcagcattattgtaaatcttgtgcaaaggttcagagaatcactcatttaagatgtttttatttccttgccttaatttatctat |
48485944 |
T |
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| Q |
214 |
tgctgaaatttaatttgcaacatttatggttctgttcttacagttacttaaatcgaaacaatactgtggcatttgcaaaaagatttggcaccattcagat |
313 |
Q |
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| T |
48485943 |
tgctgaaatttaatttgcaacatttatggttctgttcttacagttacttaaatcgaaacaatactgtggcatttgcaaaaagatttggcaccattcagat |
48485844 |
T |
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| Q |
314 |
gctggtgattgggtgagatactacttctcaattaggtctctgctt |
358 |
Q |
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| T |
48485843 |
gctggtgattgggtgagatactacttctcaattaggtctctgctt |
48485799 |
T |
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Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 251 - 331
Target Start/End: Original strand, 10034907 - 10034987
Alignment:
| Q |
251 |
ttacagttacttaaatcgaaacaatactgtggcatttgcaaaaagatttggcaccattcagatgctggtgattgggtgaga |
331 |
Q |
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| T |
10034907 |
ttacagttacgaaaatcaaaacaatattgtggaatttgcaaaaagatttggcaccattcagatggtgggaattgggtgaga |
10034987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 121
Target Start/End: Original strand, 10034681 - 10034777
Alignment:
| Q |
25 |
ttttatcgtgtgaataaattatgcaggatacaatatcttgttatggctgtggtttgacgttgccatgcaaaaccatgaagaagattaaggattcaag |
121 |
Q |
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| T |
10034681 |
ttttatccagtgaatatattgtgcaggatgccagatgttgtgctagctgtggtttgatgttgccatgcaaaaccatgaagaaggttaaggattcaag |
10034777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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