View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13006_low_35 (Length: 350)
Name: NF13006_low_35
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13006_low_35 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 9 - 304
Target Start/End: Original strand, 32218676 - 32218979
Alignment:
| Q |
9 |
attattctcaaggaccctacgattagacattatccttataatatggctaaataatgaatcatagttttattgtgctccgtaaagtacacacttgatatat |
108 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
32218676 |
attaatctcaaggaccctacgattagacattatccttataatatggctaaataatgaatcatagttttattgtgctcagtaaagtacacacttgatatat |
32218775 |
T |
|
| Q |
109 |
gacatttcttttctacactatttatatcatgaatcatcaataatcagtttttaatatgtaaaatcatc--------tgtttggtttagagtttgccgatg |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
32218776 |
gacatttcttttctacactttttatatcatgaatcatcaataatcagtttttaatatgtaaaatcatctaagtatgtgtttggtttagagtttggcgatg |
32218875 |
T |
|
| Q |
201 |
actgacgcacgttttgaagcctttttgtcgtgattttgaaaagctactatatgtagcttcaacgtgagtttttaccgttgttttagtctgatgtgaaaat |
300 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
32218876 |
attgacgcacgttttgaagcctttttgtcatgatttggaaaagctactgtatgtagcttcaacgtgagttcttaccgtggttttagtctgatgtgaaaat |
32218975 |
T |
|
| Q |
301 |
gaca |
304 |
Q |
| |
|
|||| |
|
|
| T |
32218976 |
gaca |
32218979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 177 - 261
Target Start/End: Original strand, 8382236 - 8382320
Alignment:
| Q |
177 |
tgtttggtttagagtttgccgatgactgacgcacgttttgaagcctttttgtcgtgattttgaaaagctactatatgtagcttca |
261 |
Q |
| |
|
||||||||||||||||| || ||| ||| |||||||||||||||||||||| ||||||| |||||||||||||| ||||||||| |
|
|
| T |
8382236 |
tgtttggtttagagttttccaatggctgccgcacgttttgaagcctttttgccgtgattcggaaaagctactatacgtagcttca |
8382320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 252
Target Start/End: Original strand, 31834824 - 31834899
Alignment:
| Q |
177 |
tgtttggtttagagtttgccgatgactgacgcacgttttgaagcctttttgtcgtgattttgaaaagctactatat |
252 |
Q |
| |
|
||||||||||||||||| | ||||||||| ||||||||||| ||||| | |||||||| |||||||||||||| |
|
|
| T |
31834824 |
tgtttggtttagagttttgcaatgactgacacacgttttgaaacctttgttccgtgatttgaaaaagctactatat |
31834899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 261
Target Start/End: Original strand, 43779453 - 43779489
Alignment:
| Q |
225 |
ttgtcgtgattttgaaaagctactatatgtagcttca |
261 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
43779453 |
ttgtcgtgatttggaaaggctactatatgtagcttca |
43779489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University