View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13006_low_36 (Length: 347)
Name: NF13006_low_36
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13006_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 4 - 329
Target Start/End: Complemental strand, 6139031 - 6138706
Alignment:
| Q |
4 |
agatgtccacgttattgttgttattctgcctccggcttgtgcttcgagaagaagaacctcttgctgcacctgttgctgtagagggatatagaaatgatgc |
103 |
Q |
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| T |
6139031 |
agatgtccacgttattgttgttgttctgcctccggcttgtgcttcgagaagaagaacctcttgctccacctgttgttgtagagggatatagaaatgatgc |
6138932 |
T |
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| Q |
104 |
ataggcggatctagaagcaggagaaggatcgtgtcttcctatattgaagtttgtcctaggatgctcttgacgacgtaacatgctaggaatatcgagaggc |
203 |
Q |
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| T |
6138931 |
ataggcggatctagaagcaggagaaggatcgtgtcttcctatgttgaagtttgtcctaggatgctcttgacgacataacatgctaggaatatcgagaggc |
6138832 |
T |
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| Q |
204 |
tcagtgagaaaatcagaatgaggtgcattatgatatggaattggacgatcatcttcaaaaagacctattgtaccacgaggaggactataaagtggagacc |
303 |
Q |
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| T |
6138831 |
tcagtgagaaaatcagaatgaggtgcattatgatatggaattggacgatcatcttcaaaaagacctattgtaccacgaggaggactataaagtggagacc |
6138732 |
T |
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| Q |
304 |
aagtagcagaagtagtaccataagta |
329 |
Q |
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| T |
6138731 |
aagtagcagaagtagtaccataagta |
6138706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 33731270 - 33731335
Alignment:
| Q |
39 |
cttgtgcttcgagaagaagaacctcttgctgcacctgttgctgtagagggatatagaaatgatgca |
104 |
Q |
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| T |
33731270 |
cttgtgccttgagaagaagaacttgttgcttctcttgttgctgcagagggatatagaaatgatgca |
33731335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 33802649 - 33802714
Alignment:
| Q |
39 |
cttgtgcttcgagaagaagaacctcttgctgcacctgttgctgtagagggatatagaaatgatgca |
104 |
Q |
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| T |
33802649 |
cttgtgccttgagaagaagaacatgttgcttctcttgttgctgcagagggatatagaaatgatgca |
33802714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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