View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13006_low_38 (Length: 342)
Name: NF13006_low_38
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13006_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 332
Target Start/End: Complemental strand, 34412690 - 34412377
Alignment:
| Q |
19 |
ctttcacccatgctcctcctccatatatggcattcaccatttcatgtgtgcgagagacttcttccaatctcaacaccactgccttcaaggtcatttactc |
118 |
Q |
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| T |
34412690 |
ctttcacccatgctcctcctccatatatggcattcaccatttcacgtgtgccagagacttcttccaatctcaacaccactgccttcaaggtcatttactc |
34412591 |
T |
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| Q |
119 |
ctatttttctattttgcttaaaaaattgttcgtctaccactaacaaatgataccttcaacttgtcttccataactttcctttgttttatccttcatattc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34412590 |
ctatttttctattttgcttaaaaaattgttcgtctaccactaacaaatgataccttcaacttgtcttctataactttcctttgttttatccttcatattc |
34412491 |
T |
|
| Q |
219 |
cataatcattgttgcaatttgcaggaaagataataagtcataaatgaaattcaaatgcaagggtaaaaatggaacaacaaaaataagatccttctctctc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| || ||||||||||| |
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| T |
34412490 |
cataatcattgttgcaatttgcaggaaagataataagtcataaatgaaattcaaatacaagggtaaaaatggaataacaaaaatatgacccttctctctc |
34412391 |
T |
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| Q |
319 |
ccatttcttctctg |
332 |
Q |
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|||||||||||||| |
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| T |
34412390 |
ccatttcttctctg |
34412377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 230 - 332
Target Start/End: Complemental strand, 35105644 - 35105542
Alignment:
| Q |
230 |
ttgcaatttgcaggaaagataataagtcataaatgaaattcaaatgcaagggtaaaaatggaacaacaaaaataagatccttctctctcccatttcttct |
329 |
Q |
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|||||||||||| |||||||| ||| ||||||||| |||| |||| | ||||||||| ||||||||| || ||||| |||||||||||| |||||||| |
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| T |
35105644 |
ttgcaatttgcacgaaagatagtaaatcataaatgcaatttgaatgtaggggtaaaaacggaacaacagaattaagacacttctctctcccgtttcttct |
35105545 |
T |
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| Q |
330 |
ctg |
332 |
Q |
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||| |
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| T |
35105544 |
ctg |
35105542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 332
Target Start/End: Complemental strand, 39843469 - 39843409
Alignment:
| Q |
272 |
aatgcaagggtaaaaatggaacaacaaaaataagatccttctctctcccatttcttctctg |
332 |
Q |
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|||||||||| || |||||||||||||| || | |||||||||||||||||||||||| |
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| T |
39843469 |
aatgcaagggcaataatggaacaacaaagtgaatagtcttctctctcccatttcttctctg |
39843409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 162 - 305
Target Start/End: Original strand, 38674895 - 38675036
Alignment:
| Q |
162 |
caaatgataccttcaacttgtcttccataactttcctttgttttatccttcatattccataatcattgttgcaatttgcaggaaagataataagtcataa |
261 |
Q |
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||||| ||||||||||||||||| | | ||||| |||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||| |||||| |
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| T |
38674895 |
caaatcataccttcaacttgtctcctaaaacttccctttgttttatgcttcatattgaataatcattgttgcaatttgca-gaaagataataaatcataa |
38674993 |
T |
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| Q |
262 |
atgaaattcaaatgcaagggtaaaaatggaacaacaaaaataag |
305 |
Q |
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| T |
38674994 |
ataaaatttcaat-aaagggtaaaaatggaacaacaaaattaag |
38675036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 172 - 325
Target Start/End: Original strand, 33614689 - 33614837
Alignment:
| Q |
172 |
cttcaacttgtcttccataactttcctttgttttatccttcatattccataatcattgttgcaatttgcaggaaagataataagtcataaatgaaattca |
271 |
Q |
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||||| ||||||| | |||||| |||||||||||||||||||||| ||||||||||||||||||| ||| || ||||| ||||||||||||| |
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| T |
33614689 |
cttcagcttgtctcctgtaacttccctttgttttatccttcatattggataatcattgttgcaattt-cagaaa----aataaatcataaatgaaatatg |
33614783 |
T |
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| Q |
272 |
aatgcaagggtaaaaatggaacaacaaaaataagatccttctctctcccatttc |
325 |
Q |
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||| || |||||||||||||||| ||||| |||||| | |||||||||| |||| |
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| T |
33614784 |
aatacatgggtaaaaatggaacaccaaaattaagatacctctctctcccgtttc |
33614837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 305
Target Start/End: Original strand, 22644382 - 22644492
Alignment:
| Q |
190 |
aactttcctttgttttatccttcatattccataatcattgttgcaatttgcaggaaagataataagtcataaatgaaattcaaatgcaagggtaaaaatg |
289 |
Q |
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||||| |||||||||||||||| ||||| |||||||||| |||||||| | | || ||||| ||||||||||||| ||| |||||||||||||| |
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| T |
22644382 |
aacttccctttgttttatcctttatattggataatcattggtgcaattt-ctgaaa----aataaatcataaatgaaatatgaatacaagggtaaaaatg |
22644476 |
T |
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| Q |
290 |
gaacaacaaaaataag |
305 |
Q |
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||||| ||||| |||| |
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| T |
22644477 |
gaacaccaaaattaag |
22644492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 7029128 - 7029078
Alignment:
| Q |
199 |
ttgttttatccttcatattccataatcattgttgcaatttgcaggaaagat |
249 |
Q |
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|||||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
7029128 |
ttgttttatccttcatattcgataatcattgctgcaatttgcaggaaagat |
7029078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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