View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13006_low_4 (Length: 650)

Name: NF13006_low_4
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13006_low_4
NF13006_low_4
[»] chr8 (2 HSPs)
chr8 (244-634)||(393033-393419)
chr8 (10-259)||(392768-393017)
[»] chr1 (1 HSPs)
chr1 (10-218)||(6139199-6139406)
[»] chr6 (3 HSPs)
chr6 (35-218)||(14764389-14764571)
chr6 (14-103)||(20726274-20726363)
chr6 (65-121)||(21117921-21117976)
[»] chr5 (1 HSPs)
chr5 (10-218)||(35428858-35429061)
[»] chr3 (3 HSPs)
chr3 (27-214)||(43979154-43979339)
chr3 (13-121)||(1027370-1027477)
chr3 (14-64)||(16870257-16870307)
[»] chr2 (1 HSPs)
chr2 (27-218)||(33301563-33301753)
[»] chr4 (1 HSPs)
chr4 (22-218)||(31326598-31326793)
[»] chr7 (4 HSPs)
chr7 (13-121)||(5439301-5439409)
chr7 (13-121)||(5448311-5448419)
chr7 (14-77)||(1813959-1814022)
chr7 (58-122)||(1814026-1814090)


Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 244 - 634
Target Start/End: Original strand, 393033 - 393419
Alignment:
Q  244 aaagaaaatatagtctagggatgnnnnnnncttttcgaacttgactaaccatgatgggttggatcaaatctgtcaaccgtgtcaaacattttaaattctg 343  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  393033 aaagaaaatatagtctagggatgtttttttcttttcgaacttgactaaccatgatgggttggatcaaatatgtcaaccgtgtcaaacattttaaattctg 393132  T
Q  344 attatcatttccttcagagtaaaaacataaggataaagaggtcatcagttcaannnnnnngtttagcaaaaattaacaactatttatttaaaacattggc 443  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  393133 attatcatttcctttagagtaaaaacataaggataaagaggtcatcagttcaatttttttgtttagcaaaaattaacaactatttatttaaaacattggc 393232  T
Q  444 cattnnnnnnnntcatctcccaaacgaaagaaagtgatcaacccgcaaaagtggaaagctccttcaaacccaacaaggagtgaattccttatttgagaaa 543  Q
    ||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  393233 cattaaaaaaaatcatctcccaaacgaaagaaagtgatcaacccgcaaaagtggaaagctccttcaaacccaacaaggagtgaattccttatttgagaaa 393332  T
Q  544 gatcaaggaaagaaagaacaagtgttcagcactttccaattgatcactacaaagcacacatgtatgtatgtatgtattataatgagaatga 634  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||    
T  393333 gatcatggaaagaaagaacaagtgttcagcactttccaattgatcactacaaagcacac----atgtatgtatgtattataatgagaatga 393419  T

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Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 10 - 259
Target Start/End: Original strand, 392768 - 393017
Alignment:
Q  10 catcatcatatcccaatacaagggagacattgctagcacttgccttagagtctttttcagaaactgctccacctggacaatttctctttaaatgtccaga 109  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||| |    
T  392768 catcatcatctcccaatacaagggagacattgctagcacttgccttagagtcttttttagaaattgttccacctggacaatttctctttaaatgtccaaa 392867  T
Q  110 gattccacacttctaacacaacatattctttgcatggatcttcttcccattagccccatttctagttaacaacattgagcttgatgaagtgctttctatc 209  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  392868 gattccacacttctaacacaacatattctttgcattgatcttctttctattagccccacttctagttaacaacattgagcttgatgaagtgctttctatc 392967  T
Q  210 acttttcataaaggttaccnnnnnnnttaaatacaaagaaaatatagtct 259  Q
    |||||||||||||||||||       ||||||||||||||||||||||||    
T  392968 acttttcataaaggttaccaaaaaaattaaatacaaagaaaatatagtct 393017  T

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Target: chr1 (Bit Score: 129; Significance: 2e-66; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 10 - 218
Target Start/End: Complemental strand, 6139406 - 6139199
Alignment:
Q  10 catcatcatatcccaatacaagggagacattgctagcacttgccttagagtctttttcagaaactgctccacctggacaatttctctttaaatgtccaga 109  Q
    ||||||||| |||||| |||||||||||||||||||||||| ||| ||||||||||||| ||||| |||||||||||||||||||||||||||| |||||    
T  6139406 catcatcatctcccaaaacaagggagacattgctagcacttacctcagagtctttttcataaactactccacctggacaatttctctttaaatgcccaga 6139307  T
Q  110 gattccacacttctaacacaacatattctttgcatggatcttcttcccattagccccatttctagttaacaacattgagcttgatgaagtgctttctatc 209  Q
      ||||||| ||| ||||| | | || ||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||| |||    
T  6139306 ctttccacatttccaacacgaaaaatcctttgcatggatcttcttcccattagccccacttctagtcaacaacattgagcctgatgaagtgctttc-atc 6139208  T
Q  210 acttttcat 218  Q
    |||||||||    
T  6139207 acttttcat 6139199  T

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Target: chr6 (Bit Score: 128; Significance: 8e-66; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 14764389 - 14764571
Alignment:
Q  35 gacattgctagcacttgccttagagtctttttcagaaactgctccacctggacaatttctctttaaatgtccagagattccacacttctaacacaacata 134  Q
    ||||||||||||| |||||| | |||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||| |||||  ||||    
T  14764389 gacattgctagcatttgcctcaaagtctttttcagaaactgctccacctagacaatttctctttaaatgcccagacattccacacttccaacacggcata 14764488  T
Q  135 ttctttgcatggatcttcttcccattagccccatttctagttaacaacattgagcttgatgaagtgctttctatcacttttcat 218  Q
    || |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  14764489 ttatttgcatggatcttcttcccattagccccacttctagttaacaacattgaccttgatgaagtgctttc-atcacttttcat 14764571  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 20726363 - 20726274
Alignment:
Q  14 atcatatcccaatacaagggagacattgctagcacttgccttagagtctttttcagaaactgctccacctggacaatttctctttaaatg 103  Q
    ||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||    
T  20726363 atcatctcccaaaacaagggagacattgctagcacttgcctcagagtctttttcagagactgctccacctgaacaatttatctttaaatg 20726274  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 121
Target Start/End: Original strand, 21117921 - 21117976
Alignment:
Q  65 ttcagaaactgctccacctggacaatttctctttaaatgtccagagattccacactt 121  Q
    |||||||||||| |||||||||||||||||||||||||| | ||| |||||||||||    
T  21117921 ttcagaaactgc-ccacctggacaatttctctttaaatgcctagacattccacactt 21117976  T

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Target: chr5 (Bit Score: 111; Significance: 1e-55; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 10 - 218
Target Start/End: Original strand, 35428858 - 35429061
Alignment:
Q  10 catcatcatatcccaatacaagggagacattgctagcacttgccttagagtctttttcagaaactgctccacctggacaatttctctttaaatgtccaga 109  Q
    |||||| || |||||| ||||||||||||||||||||||||  || |||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  35428858 catcatgatctcccaa-acaagggagacattgctagcacttagctcagagtctttttcagaaactgctccacttggacaatttctctttaaatgcccaga 35428956  T
Q  110 gattccacacttctaacacaacatattctttgcatggatcttcttcccattagccccatttctagttaacaacattgagcttgatgaagtgctttctatc 209  Q
      ||||||||||| ||||| | | || ||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||   |||||||| |||    
T  35428957 ctttccacacttccaacacgaaaaatcctttgcatggatcttcttcccattagctccacttctaattaacaacattgagcttgat---gtgctttc-atc 35429052  T
Q  210 acttttcat 218  Q
    |||||||||    
T  35429053 acttttcat 35429061  T

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Target: chr3 (Bit Score: 104; Significance: 2e-51; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 27 - 214
Target Start/End: Original strand, 43979154 - 43979339
Alignment:
Q  27 acaagggagacattgctagcacttgccttagagtctttttcagaaactgctccacctggacaatttctctttaaatgtccagagattccacacttctaac 126  Q
    |||||||||||||||||||||| ||||| | ||||||||||||| | ||||||||||||||||||||||||||||||   ||| ||||||| |||| | |    
T  43979154 acaagggagacattgctagcacctgcctcaaagtctttttcagataatgctccacctggacaatttctctttaaatggt-agacattccacgcttccagc 43979252  T
Q  127 acaacatattctttgcatggatcttcttcccattagccccatttctagttaacaacattgagcttgatgaagtgctttctatcacttt 214  Q
    || |||||||||||||||||||||||||||||||||||||| || ||| || |||||| |||||||||||||||||||| ||||||||    
T  43979253 acgacatattctttgcatggatcttcttcccattagccccacttatagctagcaacatcgagcttgatgaagtgctttc-atcacttt 43979339  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 13 - 121
Target Start/End: Complemental strand, 1027477 - 1027370
Alignment:
Q  13 catcatatcccaatacaagggagacattgctagcacttgccttagagtctttttcagaaactgctccacctggacaatttctctttaaatgtccagagat 112  Q
    |||||| |||||| || ||||||| | ||||||||||||||||||||||||||||||  ||| |||||||| |||||||||||||| ||||  |||| ||    
T  1027477 catcatctcccaaaactagggagaaaatgctagcacttgccttagagtctttttcaggtacttctccacctagacaatttctctttgaatg-acagacat 1027379  T
Q  113 tccacactt 121  Q
    |||||||||    
T  1027378 tccacactt 1027370  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 16870257 - 16870307
Alignment:
Q  14 atcatatcccaatacaagggagacattgctagcacttgccttagagtcttt 64  Q
    ||||| |||||| |||| ||||||||||| ||||||||||| |||||||||    
T  16870257 atcatctcccaaaacaaaggagacattgccagcacttgcctcagagtcttt 16870307  T

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Target: chr2 (Bit Score: 104; Significance: 2e-51; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 27 - 218
Target Start/End: Original strand, 33301563 - 33301753
Alignment:
Q  27 acaagggagacattgctagcacttgccttagagtctttttcagaaactgctccacctggacaatttctctttaaatgtccagagattccacacttctaac 126  Q
    ||||||||||| ||||||||| |||||| | |||||||||  || ||||||||| || |||||||||||||||||||  |||| |||||||||||| |||    
T  33301563 acaagggagacgttgctagcatttgcctcatagtctttttttgatactgctccatctagacaatttctctttaaatgctcagatattccacacttccaac 33301662  T
Q  127 acaacatattctttgcatggatcttcttcccattagccccatttctagttaacaacattgagcttgatgaagtgctttctatcacttttcat 218  Q
    |    ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  33301663 atggtatattctttgcatgggtcttcttcccattagccccacttctagttaacaacattgagcttgatgaagtggtttc-atcacttttcat 33301753  T

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Target: chr4 (Bit Score: 101; Significance: 1e-49; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 22 - 218
Target Start/End: Complemental strand, 31326793 - 31326598
Alignment:
Q  22 ccaatacaagggagacattgctagcacttgccttagagtctttttcagaaactgctccacctggacaatttctctttaaatgtccagagattccacactt 121  Q
    |||| ||||||||||  ||||||||||||  |||||||||||||||||| ||||||||||||| ||||||||||||||||||    || |||||||||||    
T  31326793 ccaaaacaagggagatgttgctagcacttttcttagagtctttttcagatactgctccacctgaacaatttctctttaaatgctaggacattccacactt 31326694  T
Q  122 ctaacacaacatattctttgcatggatcttcttcccattagccccatttctagttaacaacattgagcttgatgaagtgctttctatcacttttcat 218  Q
    | |||||  |||||||||||||  |||| ||||||||||||||||| || |||||| ||||||| ||||||||||||||||||| ||||||||||||    
T  31326693 ccaacacgccatattctttgcaccgatcctcttcccattagccccacttttagttagcaacattaagcttgatgaagtgctttc-atcacttttcat 31326598  T

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Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 5439301 - 5439409
Alignment:
Q  13 catcatatcccaatacaagggagacattgctagcacttgccttagagtctttttcagaaactgctccacctggacaatttctctttaaatgtccagagat 112  Q
    |||||| |||||| ||||||||||||||||||||||||| ||  |||||||||||| |||||||||||| |||||||||||||||| |||| | ||| ||    
T  5439301 catcatctcccaaaacaagggagacattgctagcacttgactcggagtctttttcataaactgctccacgtggacaatttctctttgaatgcctagacat 5439400  T
Q  113 tccacactt 121  Q
    |||||||||    
T  5439401 tccacactt 5439409  T

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Target: chr7; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 5448311 - 5448419
Alignment:
Q  13 catcatatcccaatacaagggagacattgctagcacttgccttagagtctttttcagaaactgctccacctggacaatttctctttaaatgtccagagat 112  Q
    |||||| |||||| ||||||||||||||||||||||||| ||  |||||||||||| |||||||||||| |||||||||||||||| |||| | ||| ||    
T  5448311 catcatctcccaaaacaagggagacattgctagcacttgactcggagtctttttcataaactgctccacgtggacaatttctctttgaatgcctagacat 5448410  T
Q  113 tccacactt 121  Q
    |||||||||    
T  5448411 tccacactt 5448419  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 1813959 - 1814022
Alignment:
Q  14 atcatatcccaatacaagggagacattgctagcacttgccttagagtctttttcagaaactgct 77  Q
    ||||| |||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  1813959 atcatctcccaaaacaagggagacattgctagcacttgcctcaaagtctttttcagaaactgct 1814022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 1814026 - 1814090
Alignment:
Q  58 agtctttttcagaaactgctccacctggacaatttctctttaaatgtccagagattccacacttc 122  Q
    |||||||||||||||||||||  |||||||||||||||||||||   ||||| ||||||||||||    
T  1814026 agtctttttcagaaactgctcatcctggacaatttctctttaaaatcccagacattccacacttc 1814090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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