View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13006_low_43 (Length: 310)
Name: NF13006_low_43
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13006_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 16 - 294
Target Start/End: Complemental strand, 36633633 - 36633355
Alignment:
| Q |
16 |
gaatctcccagctggagctttgaagtaattttgtccgttgggtggggcgggttgaaagcccttggctgcacaaagttcacctgtgtctgaatttgaatca |
115 |
Q |
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| T |
36633633 |
gaatctcccggctggagctttgaagtaattttgtccgttgggtggggcgggttgaaagcccttggctgcacaaagttcacctgtgtctgaatttgaatca |
36633534 |
T |
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| Q |
116 |
ccaaagttgaaaactgctgggtaactgaagtgaacagaatttgccacaaccaaacatatgcaaaataacacaacttgtaaagcaacaaagtacttagtag |
215 |
Q |
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| T |
36633533 |
ccaaagttgaaaactgctgggtaactgaagtgaacagaatttgccacaaccaaacatatgcaaaataacacaacttgtaaagcaacaacgtacttagtag |
36633434 |
T |
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| Q |
216 |
aagccatgccacttaactttcacttgttatgtgcaagagcaagatagccaaatagtagtgttagtgtaatacgtatcat |
294 |
Q |
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| T |
36633433 |
aagccatgccacttaactttcacttgttatgtgcaagagcaagatagccaaatagtagtgttagtgtaatacgtatcat |
36633355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 93 - 248
Target Start/End: Complemental strand, 36637965 - 36637813
Alignment:
| Q |
93 |
cacctgtgtctgaatttgaatcaccaaagttgaaaactgctgggtaactgaagtgaacagaatttgccacaaccaaacatatgcaaaataacacaacttg |
192 |
Q |
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| T |
36637965 |
cacctgtatctgaggttgaatcaccaaagttgaaagctgctggataactgaagtcaacagaatttgctacagccaaagacatgcaaaagaatacagcatg |
36637866 |
T |
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| Q |
193 |
taaagcaacaaagtacttagtagaagccatgccacttaactttcacttgttatgtg |
248 |
Q |
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| T |
36637865 |
caaagcaacaacgtact---tagaacccatgtcactgaactttcacttgttatgtg |
36637813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 88 - 188
Target Start/End: Original strand, 46939438 - 46939538
Alignment:
| Q |
88 |
aagttcacctgtgtctgaatttgaatcaccaaagttgaaaactgctgggtaactgaagtgaacagaatttgccacaaccaaacatatgcaaaataacaca |
187 |
Q |
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||||||||||||||| |||||||||||||| ||||||||||||||||| || |||| | ||| ||||||||||| |||||||| |||||||||||||| |
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| T |
46939438 |
aagttcacctgtgtccgaatttgaatcacctaagttgaaaactgctggaaaattgaactcaactgaatttgccactgccaaacatgtgcaaaataacaca |
46939537 |
T |
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| Q |
188 |
a |
188 |
Q |
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| T |
46939538 |
a |
46939538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 135
Target Start/End: Original strand, 46938346 - 46938377
Alignment:
| Q |
104 |
gaatttgaatcaccaaagttgaaaactgctgg |
135 |
Q |
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| T |
46938346 |
gaatttgaatcaccaaagttgaaaactgctgg |
46938377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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