View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13006_low_49 (Length: 284)
Name: NF13006_low_49
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13006_low_49 |
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| [»] scaffold0287 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 3620948 - 3620686
Alignment:
| Q |
18 |
actttcaaggctttggatgagttttttgaacaagtgcttaaggaacatctcaatcctaataataggaagaaagatgatgaagagaaggatatagttgacg |
117 |
Q |
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| T |
3620948 |
actttcaaggctttggatgagttctttgaacaagtcctcaaggaacatctcaatcctaataataggaaaaaagatgatgaagagaaggatatagttgacg |
3620849 |
T |
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| Q |
118 |
tgttacttgagttaaaaaatcagggtcgtctctcaattgatctcaccaatgataacatcaaagctgtcgttatggtatgttctcatgattttcaatat-- |
215 |
Q |
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| T |
3620848 |
tgttacttgagttaaagaatcagggtcgtctctcaattgatctcaccaataatcacatcaaagccgtcgttatggtatgttctcgtgacttttaatatat |
3620749 |
T |
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| Q |
216 |
-ttctttttggttatatgccctgttatatagtgttcagaacactcttttcaagatattcttcg |
277 |
Q |
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| T |
3620748 |
atatttttttgttttataccctgttatataatgttccgaacactcttttcaagatattgttcg |
3620686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 3631345 - 3631164
Alignment:
| Q |
18 |
actttcaaggctttggatgagttttttgaacaagtgcttaaggaacatctcaatcctaataataggaagaaagatgatgaagagaaggatatagttgacg |
117 |
Q |
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|||||||||||||||||||||||| |||||||||| ||| | ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
3631345 |
actttcaaggctttggatgagtttcttgaacaagtccttcaagaacatctcaatcctaataatcggaagaaagatgaagaagagaaggatatagttgacg |
3631246 |
T |
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| Q |
118 |
tgttacttgagttaaaaaatcagggtcgtctctcaattgatctcaccaatgataacatcaaagctgtcgttatggtatgttc |
199 |
Q |
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| T |
3631245 |
tgttacttgagttaaagaatcagggtcgtctctcaattgatctcaccaatgatcacatcaaatccgtccttatggtatgttc |
3631164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0287 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 14740 - 14921
Alignment:
| Q |
18 |
actttcaaggctttggatgagttttttgaacaagtgcttaaggaacatctcaatcctaataataggaagaaagatgatgaagagaaggatatagttgacg |
117 |
Q |
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|||||||||||||||||||||||| |||||||||| ||| | ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
14740 |
actttcaaggctttggatgagtttcttgaacaagtccttcaagaacatctcaatcctaataatcggaagaaagatgaagaagagaaggatatagttgacg |
14839 |
T |
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| Q |
118 |
tgttacttgagttaaaaaatcagggtcgtctctcaattgatctcaccaatgataacatcaaagctgtcgttatggtatgttc |
199 |
Q |
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| T |
14840 |
tgttacttgagttaaagaatcagggtcgtctctcaattgatctcaccaatgatcacatcaaatccgtccttatggtatgttc |
14921 |
T |
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