View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13006_low_5 (Length: 646)
Name: NF13006_low_5
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13006_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 14 - 632
Target Start/End: Complemental strand, 25765667 - 25765051
Alignment:
| Q |
14 |
tttttaaattagataatttaaaatgggatggagggggtacaatattctttcaatgtaacaaaataacaaaataatatctatacacttcgttaatcaaaat |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
25765667 |
tttttaaattagataatttaaaatgggatggagggggtacaatattctttcaatgtaacaaaataacaaaatagtatctatacacttcgttaatcaaaat |
25765568 |
T |
|
| Q |
114 |
agtttatgatgaaacaaatgcttctattttttattaagagattttacgtctttcatgtatatccttattgtaacccttcgcacgttaacacaccacgttt |
213 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25765567 |
agtttatgatgaaacaaatgcttctattttttattaagagattttacgtctttcatgtatatccttattgtaacccttcgcacgttaacacaccacgttt |
25765468 |
T |
|
| Q |
214 |
caaccgttaaaaaacttcaatgccatgacgttaatgaaaatattttaatgttagagactattttgactaaagagatgcataatnnnnnnnctattttata |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
25765467 |
caaccgttaaaaaacttcaatgccatgacgttaatgaaaatattttaatgttagagactattttgactaaagagatacataat-aaaaaactattttata |
25765369 |
T |
|
| Q |
314 |
atttctttacgtcgaagaattattatggctattcgatgtaaatttagggatgaacagaagtattttctcttcatctataagatgttgaaccgttgttaag |
413 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25765368 |
atttctttacatcgaagaattattatggctattcgatgtaaagttagggatgaacataagtattttctcttcatttataagatgttgaaccgttgttaag |
25765269 |
T |
|
| Q |
414 |
ttaagtgttataatacaacgttttcttagagggtttcaataatatttggcttagcattcctttnnnnnnnttatatttggcttaggatggcgaatgccac |
513 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
25765268 |
ttaagtgttaaaatacaacgttttcttagagggtttcaataatatttggcttagcattcc-ttaaaaaaaaaatatttggcttaggatggcgaatgccac |
25765170 |
T |
|
| Q |
514 |
attctttgatttgtaatttgaaggaatgagaaatgtgattcatccacgcatttatataatttgttcttaaagagttggaaaaagagtgacatgagtaaag |
613 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25765169 |
attctttgatttgtaatttgaaggaatgagaaatgtgattcatccacacatttatataatttgttcttaaagagttggaaaaagagtgacataggtaaag |
25765070 |
T |
|
| Q |
614 |
agtaggcccggttaatttt |
632 |
Q |
| |
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||||||||||||||||||| |
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| T |
25765069 |
agtaggcccggttaatttt |
25765051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 251 - 283
Target Start/End: Original strand, 38932797 - 38932829
Alignment:
| Q |
251 |
aaatattttaatgttagagactattttgactaa |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
38932797 |
aaatattttaatgttagagactattttgactaa |
38932829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 254 - 296
Target Start/End: Original strand, 24806713 - 24806755
Alignment:
| Q |
254 |
tattttaatgttagagactattttgactaaagagatgcataat |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||| || || |||||| |
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|
| T |
24806713 |
tattttaatgttagagactattttgactaatgaaatacataat |
24806755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 283
Target Start/End: Original strand, 37853436 - 37853465
Alignment:
| Q |
254 |
tattttaatgttagagactattttgactaa |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
37853436 |
tattttaatgttagagactattttgactaa |
37853465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 255 - 283
Target Start/End: Complemental strand, 7757024 - 7756996
Alignment:
| Q |
255 |
attttaatgttagagactattttgactaa |
283 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
7757024 |
attttaatgttagagactattttgactaa |
7756996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 283
Target Start/End: Original strand, 7672498 - 7672527
Alignment:
| Q |
254 |
tattttaatgttagagactattttgactaa |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
7672498 |
tattttaatgttagagactattttgactaa |
7672527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 251 - 283
Target Start/End: Original strand, 34979156 - 34979188
Alignment:
| Q |
251 |
aaatattttaatgttagagactattttgactaa |
283 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
34979156 |
aaatattttaatgtgagagactattttgactaa |
34979188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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