View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13006_low_58 (Length: 250)
Name: NF13006_low_58
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13006_low_58 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 38348729 - 38348490
Alignment:
| Q |
11 |
agaatataacagaaactaagaaaggaataaacgagagatgcttcttctaacagtaatttcactcaccttttaggtttaaagtttgttgtgcgtctttcag |
110 |
Q |
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| T |
38348729 |
agaacataacagaaactaagaaaggaataaacgagagatgcttcttctaacagtaatttcactcaccttttaggtttaaagtttgttgtgtgtctttcag |
38348630 |
T |
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| Q |
111 |
tatgttgaagagatcgttaggattaggaacttggtccacaaaataggaaagagtgaggctgtcacagcatgacctagtcaaggttagggttacttactct |
210 |
Q |
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| T |
38348629 |
tatgttgaagagatcgttaggattaggaacttggtccacaaaataggaaagagtgaggctgtcacagcatgacctagtcaaggttagggttacttactct |
38348530 |
T |
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| Q |
211 |
ctcttctttccattcaaaagaaagctctctaaccaaagtt |
250 |
Q |
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| T |
38348529 |
ctcttctttccattcaaaagaaagctctctaaccaaagtt |
38348490 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 31573063 - 31573108
Alignment:
| Q |
151 |
aaataggaaagagtgaggctgtcacagcatgacctagtcaaggtta |
196 |
Q |
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| T |
31573063 |
aaataggaaggagtgaggctagcacagcatgacctagtcagggtta |
31573108 |
T |
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