View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13006_low_6 (Length: 640)
Name: NF13006_low_6
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13006_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 599; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 12 - 622
Target Start/End: Original strand, 35693660 - 35694270
Alignment:
| Q |
12 |
aatactcttaacagatcagtgaggttatgtaattgcatactaacttgatccggtttcattatatattgttgatagtgcttatgaaaataattgatagtga |
111 |
Q |
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| T |
35693660 |
aatactcttaacagatcagtgaggttatgtaattgcatactaacttgatccggtttcattatatattgttgatagtgctcatgaaaataattgatagtga |
35693759 |
T |
|
| Q |
112 |
agttcttgttatttgtttcattaggcaatatactctgcaggaaatgaaccttaaaataatgaaaagcaacatcaaaaaacgaagaaacctcgccatcgat |
211 |
Q |
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| T |
35693760 |
agttcttgttatttgtttcattaggcaatatactctgcaggaaatgaaccttaaaataatgaaaagcaacatcaaaaaatgaagaaacctcgccatcgat |
35693859 |
T |
|
| Q |
212 |
gcaactaggttctgttaggttgaacaagtcttcaagaacaaaccaaggaagctgattttcaagtaatatgagatcaagcttcacatcacacctcaaccat |
311 |
Q |
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| T |
35693860 |
gcaactaggttctgttaggttgaacaagtcttcaagaacaaaccaaggaagctgattttcaagtaatatgagatcaagcttcacatcacacctcaaccat |
35693959 |
T |
|
| Q |
312 |
ggtttggataacaaaggatcttcttgtggccactcaagcgaccgaagaaaatactcaattataaaacaagcatcggttaaaataatcttaacaaaatcat |
411 |
Q |
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| T |
35693960 |
ggtttggataacaaaggatcttcttgtggccactcaagcgaccgaagaaaatactcaattataaaacaagcatcggttaaaataatcttaacaaaatcat |
35694059 |
T |
|
| Q |
412 |
cactagtttgttcaatggcttctgagtaacaagatctaatgatttcttccgattttttgatgtaaccaatgcaatctcctaaccccttatgagtcctttc |
511 |
Q |
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| T |
35694060 |
cactagtttgttcaatggcttctgagtaacaagatctaatgatttcttcagattttttgatgtaaccaatgcaatctcctaaccccttatgagtcctttc |
35694159 |
T |
|
| Q |
512 |
taagaaaaaactcttgaggtacctcaatttgagatcttccattgattctaacctcttgtctccattgtgaaatggaccaatggaaacaatggttggagta |
611 |
Q |
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| T |
35694160 |
taagaaaaaactcttgaggtacctcaatttgagatcttccattgattctaacctcttgtctccattgtgaaatggaccaatggaaacaatggttggagta |
35694259 |
T |
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| Q |
612 |
taggcttcttg |
622 |
Q |
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| T |
35694260 |
taggcttcttg |
35694270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 437 - 480
Target Start/End: Complemental strand, 35690097 - 35690054
Alignment:
| Q |
437 |
gtaacaagatctaatgatttcttccgattttttgatgtaaccaa |
480 |
Q |
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| T |
35690097 |
gtaacaagatctaatgatttcttctgattttctgatgtaaccaa |
35690054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 402 - 434
Target Start/End: Complemental strand, 35691757 - 35691725
Alignment:
| Q |
402 |
acaaaatcatcactagtttgttcaatggcttct |
434 |
Q |
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| T |
35691757 |
acaaaatcatcactagtttgttcaatggattct |
35691725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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