View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13006_low_60 (Length: 242)
Name: NF13006_low_60
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13006_low_60 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 11623844 - 11623620
Alignment:
| Q |
18 |
agtcacttcttctcttgagacagtgaccatctttctcaccaatgtgcatttggttggtagtctcagcacaagaaaggggaactaattttgtctctttttg |
117 |
Q |
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| T |
11623844 |
agtcacttcttctcttgagacagtgaccatctttctcaccaatgtgcatttggttggtagtctcagcacaagaaaggggaactaattttgtctctttttg |
11623745 |
T |
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| Q |
118 |
tgtaacactataaataggtgtttttattttatgtgctaagcttgttctgtttgagttgatgtacatataaatataagcttgttctcttcactcttgagct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
11623744 |
tgtaacactataaataggtgtttttattttatgtgctaagcttgttctgtttgagttgatgtacatgtaaatataagcttgttctcttcactcttgagct |
11623645 |
T |
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| Q |
218 |
gcttactttattattttcttatgat |
242 |
Q |
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|||||||||||||||||||||||| |
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| T |
11623644 |
ccttactttattattttcttatgat |
11623620 |
T |
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