View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13006_low_65 (Length: 215)

Name: NF13006_low_65

Description: NF13006

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF13006_low_65

[»] chr4 (1 HSPs)

[»] chr6 (1 HSPs)

Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 163; E-Value: 3e-87

Query Start/End: Original strand, 15 - 201

Target Start/End: Original strand, 7109958 - 7110144

Alignment:

Q	15	accactttgaagcgttgtatgcatccattaatggatgcttctccaaggaatacattgtccattcaaacaacctccctttgcatgtattacccatgtgcaa	114	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	7109958	accactttgaagcgttgtatgcatccattaatggatgcttttccaaggaatacattgtccattcaaacagcctccatttgcatgtattacccatgtgcaa	7110057	T

Q	115	ttatcgcatggcatatgcttttcgttgaaaacttcaagataatgtcgacggcgatcttgaggccatctaaaactacaaaagaataat	201	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	7110058	ttatcgcatggcatatgcttttcgttgaaaacatcaagataatgacgacggcgatcttgatgccatctaaaactacaaaagaataat	7110144	T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 30; E-Value: 0.00000007

Query Start/End: Original strand, 1 - 46

Target Start/End: Complemental strand, 6616134 - 6616089

Alignment:

Q	1	cccctttatttgctaccactttgaagcgttgtatgcatccattaat	46	Q
		\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	6616134	cccctttctttgcgaccactttgaagtgttgtttgcatccattaat	6616089	T

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