View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13006_low_7 (Length: 633)
Name: NF13006_low_7
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13006_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 8 - 480
Target Start/End: Complemental strand, 53295793 - 53295308
Alignment:
| Q |
8 |
acattattctctactaacaataccgttttcaactacnnnnnnnctttcatgtcaaaaagttttagatcatgtaacgttgattttgttgnnnnnnngaagt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
53295793 |
acattattctctactaacaataccgttttcaactactttttttctttcatgtcaaaaagttttagatcatgtaacgttgattttgttgagaaaaaaaagt |
53295694 |
T |
|
| Q |
108 |
taaaaacacaagcctggacacatgctcatg-----------gtaattacttggaa--gtctagtcacgtaacgttcatgataaaaatacctagctctatt |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
53295693 |
taaaaacacaagcctggacacatgctcatgtctagctcatggtaattacttggaactgtctagtcacataatgttcatgataaaaatacctagctctatt |
53295594 |
T |
|
| Q |
195 |
ctttatattgacgtatcactcattcaaaaaacattgaggtaagtatcacttaagctgatactaagcccactttttcttaaaagcaagacgtgagcgtaac |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||| |||||||||| || |
|
|
| T |
53295593 |
ctttatattgacgtatcactcattcaaaaaacattgaggtaagtatcacttaagctgataaaaagtcaactttttcttaaaagcaatacgtgagcgtcac |
53295494 |
T |
|
| Q |
295 |
attataaggaggctcaattaattcttggaaccaaaccggcgttttcatttcgtatcaaacaagcaagtatttgacaatttaaatcacataggtttgattg |
394 |
Q |
| |
|
|| ||| ||||||||||||||||||| |||||| ||| ||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
53295493 |
cttctaatgaggctcaattaattcttgtaaccaagccgtcgttttcatttcgtatcaaccaagcaagtatgtgacaatttaaatcacaaaggtttgattg |
53295394 |
T |
|
| Q |
395 |
gttaaaaatatccaatgattgaatataaattttcgatacaataatagtaatactactacacacacaccttactgatcttttgacaa |
480 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53295393 |
gttagaaatatccaatgattgaatataaaatttcgatacaataatagtaatactactacacacacaccttactgatcttttgacaa |
53295308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 558 - 616
Target Start/End: Complemental strand, 53295256 - 53295198
Alignment:
| Q |
558 |
gttgcgttaatcaatattcttacatcnnnnnnngttacaattattatttatataattag |
616 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
53295256 |
gttgcgttaatcaatattcttacatcaaaaaaagttacaattattatttatataattag |
53295198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University