View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13006_low_9 (Length: 606)
Name: NF13006_low_9
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13006_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 7 - 588
Target Start/End: Original strand, 32483758 - 32484339
Alignment:
| Q |
7 |
tagattattctagaatattaattgcctgctatagctatagcataaatttttgcattctgttgtattgtcaaggttaactaattaacatagtcaaataata |
106 |
Q |
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| T |
32483758 |
tagattattctagaatattaattgcttgctatagctatagcataaatttttgcattctgttgtattgtcgaggttaattaattaacatagtcaaataata |
32483857 |
T |
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| Q |
107 |
ttatacaatatatgtctaatgacttttttgttttgttaaaaaataaaggcttagaggaagcaaattttcctgctgtggtaagctcaccagcggagttcag |
206 |
Q |
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| T |
32483858 |
ttatacaatatatgtctaatgacttttttgttttgttaaaaaataaaggcttagaggaagcaaattttcctgctgtggtaagctcaccagcggagttcag |
32483957 |
T |
|
| Q |
207 |
gtgtgtaagggttagttcaattgatgatgcagatgataggtatgcatatcaaacggctgttaacattggaggacatttgttcaaaggaattctctatgat |
306 |
Q |
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| T |
32483958 |
gtgtgtaagggttagttcaattgatgatgcagatgataggtatgcatatcaaacggctgttaacattggaggacatttgttcaaaggaattctctatgat |
32484057 |
T |
|
| Q |
307 |
tttggtccagaaagtagtaccaacaatagcaacaacaatagtaattataataatagtaattacatgattggggagacttccggtggaggcggtgttggcg |
406 |
Q |
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| T |
32484058 |
tttggtccagaaagtagtaccaacaatagcaacaacaatagtaattataataatagtaattacatgattggggagacttccggtggaggcggtgttggcg |
32484157 |
T |
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| Q |
407 |
ttgctcaaccgttgaacctaattgccgactctgataccactgttgttgcctcttcgggcgcacttgttgatccttcttcgttgtattcggctccgattaa |
506 |
Q |
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| T |
32484158 |
ttgctcaaccgttgaacctaattgccgactctgataccactgttgttgcctcttcgggcgcacttgttgatccttcttcgttgtattcggctccgattaa |
32484257 |
T |
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| Q |
507 |
tgccttcatgacggctagtggtacgcaattcttccctcgcccaagatcttgaaaacaaaattgagaggaaagaggagttatt |
588 |
Q |
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| T |
32484258 |
tgccttcatgacggctagtggtacgcaattcttccctcgcccaagatcttgaaaacaaaattgagaagaaagaggagttatt |
32484339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 470 - 559
Target Start/End: Original strand, 8103003 - 8103092
Alignment:
| Q |
470 |
ttgttgatccttcttcgttgtattcggctccgattaatgccttcatgacggctagtggtacgcaattcttccctcgcccaagatcttgaa |
559 |
Q |
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| T |
8103003 |
ttgttgatccttcttctttgtatccagctccacttaataccttcatgccttctagtggtacgcaattcttcccccacccaagatcttgaa |
8103092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 253 - 306
Target Start/End: Complemental strand, 52766801 - 52766748
Alignment:
| Q |
253 |
tatcaaacggctgttaacattggaggacatttgttcaaaggaattctctatgat |
306 |
Q |
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| T |
52766801 |
tatcaaacggctgtgaacataggagggcatgttttcaaaggaattctctatgat |
52766748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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