View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13007_low_2 (Length: 352)
Name: NF13007_low_2
Description: NF13007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13007_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 12 - 336
Target Start/End: Complemental strand, 33308863 - 33308541
Alignment:
| Q |
12 |
atgaaccaacaagcaatcaaaaagagttgtccatcttgctcggaagcaaattgattaattgaattataacatttagacatcataaagatttaagaattat |
111 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||| |||| |||||||||| ||||| |||||||||||||||||| |
|
|
| T |
33308863 |
atgaaccaacaagcaatcaaaaatagttgttcatcttgctcggaagcaaaatgattaatcgaatcataacatttaaacatcgtaaagatttaagaattat |
33308764 |
T |
|
| Q |
112 |
gaaaatacaacgtattccnnnnnnnnnnnnnnnnntggctttcggacaatccctcgtagtgtgcatagttttctcttcagtcgcccgcatcttggatcta |
211 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33308763 |
gaaaatacaacgtattccaaaacaaaaaaaaat--tggctttcggacaatccctcataatgtgcatagttttctcttcagtcgcccgcatcttggatcta |
33308666 |
T |
|
| Q |
212 |
aggcatcattaaccatcaagcaaagaaaggacctaagacaatcccttaatctaatcattaagcatcattaatcttagatctaatggagtcatttggtaat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33308665 |
aggcatcattaaccatcaagcaaagaaaggacctaagacaatcctttaatctaatcattaagaatcattagtcttagatctaatggagtcatttggtaat |
33308566 |
T |
|
| Q |
312 |
ttgacagcgtaaaaagccaaccaaa |
336 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
33308565 |
ttgacagcgtaaaaagccaaccaaa |
33308541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University