View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13008_high_1 (Length: 390)
Name: NF13008_high_1
Description: NF13008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13008_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 13 - 316
Target Start/End: Original strand, 10945347 - 10945650
Alignment:
| Q |
13 |
aaaatccaatttaatggggaagaagtagaagcggttcaacctagcctagcctaacgatagttcctaacaaaagaaaagtcacagttgaaagcggtagctt |
112 |
Q |
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| T |
10945347 |
aaaatccaatttaatggggaagaagtagaagcggttcaacctagcctagcctaacgatagttcctaacaaaagaaaagtcacagttgaaagcggtagctt |
10945446 |
T |
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| Q |
113 |
tttcgctccaaggacaacttcagtcgcctaccaactctaagaactgtattgtctaacaaggaaacaatactgaaagctaagatgccaattacctgatact |
212 |
Q |
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| T |
10945447 |
tttcgctccaaggacaacttcagtcgcctaccaactctaagaactgtattgtctaacaaggaaacaatactgaaagctaagatgccaattacctgatact |
10945546 |
T |
|
| Q |
213 |
atttgattctaacattccatgtaatgcaataataaaagtccatattttcaagttgctacctatgcaatgttattggtccaggtttgaatggcataagggc |
312 |
Q |
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| T |
10945547 |
atttgattctaacattccatgtaatgcaataataaaagtccatattttcaagttgctacctatgcaatgttattggtccaggtttgaatggcataagggt |
10945646 |
T |
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| Q |
313 |
taac |
316 |
Q |
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|||| |
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| T |
10945647 |
taac |
10945650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 371
Target Start/End: Original strand, 10945647 - 10945680
Alignment:
| Q |
338 |
taacattccttatttgttgatccaaactgggcaa |
371 |
Q |
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| T |
10945647 |
taacattccttatttgttgatccaaactgggcaa |
10945680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 42010656 - 42010609
Alignment:
| Q |
131 |
ttcagtcgcctaccaactctaagaactgtattgtctaacaaggaaacaata |
181 |
Q |
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| T |
42010656 |
ttcagtcaccaaccaactctaaga---gtattgtctaacaaggaaacaata |
42010609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 154
Target Start/End: Original strand, 42010877 - 42010941
Alignment:
| Q |
90 |
gtcacagttgaaagcggtagctttttcgctccaaggacaacttcagtcgcctaccaactctaaga |
154 |
Q |
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||||| |||||||| | || |||||| ||| |||||||||||||||||||| || |||| ||||| |
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| T |
42010877 |
gtcacggttgaaagtgttaccttttttgctacaaggacaacttcagtcgccaactaactataaga |
42010941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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