View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13008_low_2 (Length: 373)
Name: NF13008_low_2
Description: NF13008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13008_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 34076607 - 34076957
Alignment:
| Q |
1 |
ttcacgagtgtatcaccgtccttaagctgaggaacacacacatactcttgtcttcaattctcaacaatgcatatccaacccaaacaattcatcacattta |
100 |
Q |
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| T |
34076607 |
ttcacgagtgtatcaccgtccttaagctgaggaacacacacatactcttgtcttcaattctcaacaatgcatatccaacccaaacaattcatcacattta |
34076706 |
T |
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| Q |
101 |
ggttggtgaagttttcacgagctaaaaccatttgcgtgtctctttattcacccatacccaccaaactctgtttacgtggtccacaccaaatcaaccacgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34076707 |
ggttggtgaagttttcacgagctaaaaccatttgcgtgtctctttattcacccatacccaccaaactctgtttaagtggtccacaccaaatcaaccacgt |
34076806 |
T |
|
| Q |
201 |
aaaaaaccacacctttcttcttttgttcaatctcaaacactgttttatccattaccctttatgcnnnnnnnnnnnnnnnnatgatcatgatcatgataat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34076807 |
aaaaaaccacacctttcttcttttgttcaatctcaaacactgttttatccattaccctttatgctttttctttttcttttatgatcatgatcatgataat |
34076906 |
T |
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| Q |
301 |
gtgaagtgagnnnnnnnggtatattgtgttgcttgctgcatagtgaaggtt |
351 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
34076907 |
gtgaagtgagtttttttggtatattgtgttgcttgctgcatagtgaaggtt |
34076957 |
T |
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