View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13008_low_6 (Length: 263)
Name: NF13008_low_6
Description: NF13008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13008_low_6 |
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| [»] scaffold0056 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 26913664 - 26913511
Alignment:
| Q |
18 |
atatttctcacgcaagcttgaaggaaaattgtacattgatgacatgaggatgaaaaatgagtgatagtaataatgcattggcatggaaaattaaataaag |
117 |
Q |
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| T |
26913664 |
atatttctcacgcaagcttgaaggaaaattgtacattgatgacatgaggatgaaaaatgagtgatagtaataatgcattggcatggaaaattaaataaag |
26913565 |
T |
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| Q |
118 |
atcatagcaaataaagtcatgttggatgtgatgtcgtacaatataagaatgtca |
171 |
Q |
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| T |
26913564 |
atcatagcaaataaagtcatgttggatgtgatgttgtacaatataataatgtca |
26913511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 21212632 - 21212791
Alignment:
| Q |
18 |
atatttctcacgcaagcttgaaggaaaattgtacattgatgacatgaggatgaaaaatgagtgatagtaataatgcattggcatggaaaattaaataaag |
117 |
Q |
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| T |
21212632 |
atatttctcacgccagcttgaaggaaaaatgtacattgatgacatgaggatgaaaaaagaatgatattaataatgcattgggatggaaaattaaataaat |
21212731 |
T |
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| Q |
118 |
atcatagca------aataaagtcatgttggatgtgatgtcgtacaatataagaatgtca |
171 |
Q |
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| T |
21212732 |
atcatagcaaatattaatatagtcatgttggatgtgatggtgtacaatataataatgtca |
21212791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0056 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0056
Description:
Target: scaffold0056; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 61964 - 61907
Alignment:
| Q |
17 |
catatttctcacgcaagcttgaaggaaaattgtacattgatgacatgaggatgaaaaa |
74 |
Q |
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| T |
61964 |
catatttctcacgcaagcttgaaggaaaatcacacattgatgtcatgaggatggaaaa |
61907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0056; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 61864 - 61824
Alignment:
| Q |
100 |
atggaaaattaaataaagatcatagcaaataaagtcatgtt |
140 |
Q |
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| T |
61864 |
atggaaaattaaataaagattatggcaaatatagtcatgtt |
61824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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