View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13008_low_8 (Length: 247)

Name: NF13008_low_8
Description: NF13008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13008_low_8
NF13008_low_8
[»] chr3 (3 HSPs)
chr3 (1-236)||(34760857-34761097)
chr3 (47-96)||(25447298-25447347)
chr3 (145-209)||(44014714-44014778)
[»] chr1 (3 HSPs)
chr1 (47-116)||(9572142-9572211)
chr1 (48-92)||(3495693-3495737)
chr1 (47-96)||(48830130-48830179)
[»] chr7 (3 HSPs)
chr7 (77-160)||(25422347-25422431)
chr7 (47-96)||(20526413-20526462)
chr7 (47-96)||(22283798-22283847)
[»] chr4 (3 HSPs)
chr4 (1-37)||(43729829-43729865)
chr4 (50-99)||(28300350-28300399)
chr4 (110-193)||(7367986-7368070)
[»] chr6 (2 HSPs)
chr6 (47-117)||(1402963-1403033)
chr6 (47-96)||(2735036-2735085)
[»] chr5 (1 HSPs)
chr5 (47-96)||(26516367-26516416)
[»] chr8 (2 HSPs)
chr8 (145-209)||(16162850-16162914)
chr8 (73-129)||(29592194-29592250)
[»] chr2 (1 HSPs)
chr2 (48-92)||(44439418-44439462)


Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 34760857 - 34761097
Alignment:
Q  1 caatctatcaaatcaccatctggactctgcaacaaaatnnnnnnnn-----gataaaataaagttaaactacgtttgtataagctataaactgttttcat 95  Q
    ||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||| |||| |||||||||||||||||||||||    
T  34760857 caatctatcaaatcaccatctggactctgcaacaaaataaataaataaaaagataaaataaagttaaactatgtttatataagctataaactgttttcat 34760956  T
Q  96 aggcgatcactgagagcttataaacatgtcataaattgtttccatgaccttctcaaacagtctcacgaatgtttacgacagtatataaactcaaataatc 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34760957 aggcgatcactgagagcttataaacatgtcataaattgtttccatgaccttctcaaacagtctcacgaatgtttacgacagtatataaactcaaataatc 34761056  T
Q  196 taatccaaagaggcaaaatatcagtaacactgccacaggtt 236  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  34761057 taatccaaagaggcaaaatatcagtaacactgccactggtt 34761097  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 25447347 - 25447298
Alignment:
Q  47 gataaaataaagttaaactacgtttgtataagctataaactgttttcata 96  Q
    ||||||||||| ||||| |   ||||||||||||||||||||||||||||    
T  25447347 gataaaataaacttaaattgtttttgtataagctataaactgttttcata 25447298  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 44014778 - 44014714
Alignment:
Q  145 ttctcaaacagtctcacgaatgtttacgacagtatataaactcaaataatctaatccaaagaggc 209  Q
    ||||||||||||||||| | |||||| |  |||| |||||||||||||| | |||||||| ||||    
T  44014778 ttctcaaacagtctcacaagtgtttatgctagtagataaactcaaataagccaatccaaacaggc 44014714  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 9572211 - 9572142
Alignment:
Q  47 gataaaataaagttaaactacgtttgtataagctataaactgttttcataggcgatcactgagagcttat 116  Q
    ||||||||||||||||| | | |||||||||||||||| | ||||||||| || |||| ||||| |||||    
T  9572211 gataaaataaagttaaattgcttttgtataagctataagccgttttcatatgccatcattgagaacttat 9572142  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 3495737 - 3495693
Alignment:
Q  48 ataaaataaagttaaactacgtttgtataagctataaactgtttt 92  Q
    |||||||||||||||| ||||||||||||| ||||||| ||||||    
T  3495737 ataaaataaagttaaattacgtttgtataacctataaattgtttt 3495693  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 48830179 - 48830130
Alignment:
Q  47 gataaaataaagttaaactacgtttgtataagctataaactgttttcata 96  Q
    ||||||||||||| ||||||  ||  ||||||||||||||||||||||||    
T  48830179 gataaaataaagtcaaactattttcatataagctataaactgttttcata 48830130  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 160
Target Start/End: Original strand, 25422347 - 25422431
Alignment:
Q  77 agctataaactgttttcataggcgatcactgagagcttataaacatgtcataaattgtttccatgacct-tctcaaacagtctca 160  Q
    ||||||||| |||||||| |||| ||||  ||||| |||||||||||||||||  ||||||||| | || || ||||||||||||    
T  25422347 agctataaattgttttcacaggctatcatggagagtttataaacatgtcataaggtgtttccataagctctcccaaacagtctca 25422431  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 20526413 - 20526462
Alignment:
Q  47 gataaaataaagttaaactacgtttgtataagctataaactgttttcata 96  Q
    ||||||||||||||||| || ||||||| | ||||||| |||||||||||    
T  20526413 gataaaataaagttaaattatgtttgtacatgctataagctgttttcata 20526462  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 22283847 - 22283798
Alignment:
Q  47 gataaaataaagttaaactacgtttgtataagctataaactgttttcata 96  Q
    ||||||||||||||||| |   ||||||| ||||||||||||||||||||    
T  22283847 gataaaataaagttaaattgtttttgtatcagctataaactgttttcata 22283798  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 43729829 - 43729865
Alignment:
Q  1 caatctatcaaatcaccatctggactctgcaacaaaa 37  Q
    |||||||||||||| ||||||||||||||||||||||    
T  43729829 caatctatcaaatctccatctggactctgcaacaaaa 43729865  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 28300399 - 28300350
Alignment:
Q  50 aaaataaagttaaactacgtttgtataagctataaactgttttcataggc 99  Q
    |||||||||||||| |   ||||||||||||||||||| |||||||||||    
T  28300399 aaaataaagttaaattgtttttgtataagctataaactattttcataggc 28300350  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 193
Target Start/End: Complemental strand, 7368070 - 7367986
Alignment:
Q  110 agcttataaacatgtcataaattgtttccatgacct-tctcaaacagtctcacgaatgtttacgacagtatataaactcaaataa 193  Q
    ||||||||||||||||||||  ||||| ||||| || || ||||||||||||| |  ||||| | | ||| ||||||||||||||    
T  7368070 agcttataaacatgtcataagctgttttcatgagctctcccaaacagtctcacaagcgtttatgcctgtagataaactcaaataa 7367986  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 117
Target Start/End: Original strand, 1402963 - 1403033
Alignment:
Q  47 gataaaataaagttaaactacgtttgtataagctataaactgttttcataggcgatcactgagagcttata 117  Q
    ||||||||||||||||||||  ||  ||||||||||||| |||||||||| || ||||  |||| ||||||    
T  1402963 gataaaataaagttaaactattttcatataagctataaattgttttcataagctatcatggagatcttata 1403033  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 2735036 - 2735085
Alignment:
Q  47 gataaaataaagttaaactacgtttgtataagctataaactgttttcata 96  Q
    ||||||||||||||||| ||  ||||||||| |||||| |||||||||||    
T  2735036 gataaaataaagttaaattatttttgtataatctataagctgttttcata 2735085  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 26516367 - 26516416
Alignment:
Q  47 gataaaataaagttaaactacgtttgtataagctataaactgttttcata 96  Q
    ||||||||||||| ||||||| ||  |||||| |||||||||||||||||    
T  26516367 gataaaataaagtcaaactactttcatataagttataaactgttttcata 26516416  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 209
Target Start/End: Original strand, 16162850 - 16162914
Alignment:
Q  145 ttctcaaacagtctcacgaatgtttacgacagtatataaactcaaataatctaatccaaagaggc 209  Q
    ||||||||||||||||| | |||||| |  |||| |||||||||||||| | |||||||| ||||    
T  16162850 ttctcaaacagtctcacaagtgtttatgctagtagataaactcaaataagccaatccaaacaggc 16162914  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 29592250 - 29592194
Alignment:
Q  73 tataagctataaactgttttcataggcgatcactgagagcttataaacatgtcataa 129  Q
    |||||||||||| ||||||||||| || ||| | ||||||||||  |||||||||||    
T  29592250 tataagctataatctgttttcataagctatcccagagagcttatggacatgtcataa 29592194  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 44439462 - 44439418
Alignment:
Q  48 ataaaataaagttaaactacgtttgtataagctataaactgtttt 92  Q
    ||||||||||||||||||   ||||||||||||||||| ||||||    
T  44439462 ataaaataaagttaaactgtttttgtataagctataaattgtttt 44439418  T

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