View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13008_low_9 (Length: 243)
Name: NF13008_low_9
Description: NF13008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13008_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 34760869 - 34760642
Alignment:
| Q |
1 |
atttgatagattgtattttatctcatcaacaaccagcttttgatcatcctaagcttaaagggcataaaccattggtaataatttcaataactactcaagc |
100 |
Q |
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| T |
34760869 |
atttgatagattgtattttatctcatcatcaaccagcttttgatcatcctaagcttaaagggcataaaccattggtaataatttcaataaccactcaagc |
34760770 |
T |
|
| Q |
101 |
atacaaaatgactttgcattaatttgaactaagatttataaattaggcattgagatttttagtttatttgagagacagaaagtaagagggttaaggttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34760769 |
atacaaaatgactttgcattaatttgaactaagatttataaattaggcattgagatttttagtttatttgagagacagaaagtaagagggttaaggttta |
34760670 |
T |
|
| Q |
201 |
caggatccaccagaaaggccaaatggat |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
34760669 |
caggatccaccagaaaggccaaatggat |
34760642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 43815421 - 43815350
Alignment:
| Q |
6 |
atagattgtattttatctcatcaacaaccagcttttgatcatcctaagcttaaagggcataaaccattggta |
77 |
Q |
| |
|
||||||||| ||||| | ||| ||||||||||||||||||||||| | |||||||| |||||||||||| |
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| T |
43815421 |
atagattgtgttttaacgcataaacaaccagcttttgatcatcctttattgaaagggcaaaaaccattggta |
43815350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 43729841 - 43729763
Alignment:
| Q |
1 |
atttgatagattgtattttatctcatcaacaaccagcttttgatcatcctaagcttaaagggcataaaccattggtaat |
79 |
Q |
| |
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| T |
43729841 |
atttgatagattgtattatatctcatcaacaaccagcttttgaccatccactactcaaaggacaaaaaccattggtaat |
43729763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 43729649 - 43729607
Alignment:
| Q |
181 |
agtaagagggttaaggtttacaggatccaccagaaaggccaaa |
223 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
43729649 |
agtaagaggcttaaggtttacaggatccaccagaaaggccaaa |
43729607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 29215351 - 29215280
Alignment:
| Q |
6 |
atagattgtattttatctcatcaacaaccagcttttgatcatcctaagcttaaagggcataaaccattggta |
77 |
Q |
| |
|
||||||||| || |||||||| ||||||| |||||||||||||||| | | | ||| || |||||||||||| |
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| T |
29215351 |
atagattgtgttgtatctcataaacaaccggcttttgatcatcctacgttgagaggacaaaaaccattggta |
29215280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 29253757 - 29253801
Alignment:
| Q |
6 |
atagattgtattttatctcatcaacaaccagcttttgatcatcct |
50 |
Q |
| |
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||||||||| || | |||||| ||||||||||||||||||||||| |
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|
| T |
29253757 |
atagattgtgttatgtctcataaacaaccagcttttgatcatcct |
29253801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 51
Target Start/End: Complemental strand, 14497879 - 14497849
Alignment:
| Q |
21 |
tctcatcaacaaccagcttttgatcatccta |
51 |
Q |
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||||||||||||||||||||||||||||||| |
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|
| T |
14497879 |
tctcatcaacaaccagcttttgatcatccta |
14497849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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