View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13009_low_1 (Length: 287)
Name: NF13009_low_1
Description: NF13009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13009_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 50 - 282
Target Start/End: Complemental strand, 1744035 - 1743798
Alignment:
| Q |
50 |
ttattgagttgataaatgattaagccattacatttgttgatcattctcatcttaactttctagatcaa-----attatatcaaatatgttggtgaaagat |
144 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
1744035 |
ttattgagtttataaatgattaagccattaaatttgttgatcattctcatcttaactttctagatcaacatttattatatcaaatatgttattgaaagat |
1743936 |
T |
|
| Q |
145 |
tttccacaagaatgttgggaatcaatcttcaaactccttgaccaaggacatgatttggagtctgtttctatggtctgcaagaaattcctttcctttacaa |
244 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1743935 |
tttcctcaagaatgttgggaatcaatcttcaaattccttggccaaggaaaagatttggagtctgtttctatggtctgcaagaaattcctttccattacaa |
1743836 |
T |
|
| Q |
245 |
accgagttaaattctctctaacaatacatgattccact |
282 |
Q |
| |
|
||| ||| ||||| ||| |||||||||||||||||||| |
|
|
| T |
1743835 |
accaagtgaaattttctttaacaatacatgattccact |
1743798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 120 - 285
Target Start/End: Original strand, 2006422 - 2006587
Alignment:
| Q |
120 |
tatatcaaatatgttggtgaaagattttccacaagaatgttgggaatcaatcttcaaactccttgaccaaggacatgatttggagtctgtttctatggtc |
219 |
Q |
| |
|
|||||||||||| || |||||||||||||| ||||||||||||||||||||||| | | |||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
2006422 |
tatatcaaatatattagtgaaagattttcctcaagaatgttgggaatcaatcttaagattccttggccaaggagatgatttggagtctgtttctatggtc |
2006521 |
T |
|
| Q |
220 |
tgcaagaaattcctttcctttacaaaccgagttaaattctctctaacaatacatgattccactgtt |
285 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||||||| |||||||| |||||||| |
|
|
| T |
2006522 |
tgcaagaaattcctttccattacaaaccgagttaaagcatctctaacagtacatgatcccactgtt |
2006587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 105
Target Start/End: Complemental strand, 1749187 - 1749110
Alignment:
| Q |
27 |
actttcactcaaatatgattggtttattgagttgataaatgattaagccattacatttgttgatcattctcatcttaac |
105 |
Q |
| |
|
||||||||| |||| || |||||| |||||| | | |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1749187 |
actttcact-aaatgtggttggttcattgagctaagaaattattaagccattacatttgttgatcattctcatcttaac |
1749110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University