View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1300_high_11 (Length: 327)
Name: NF1300_high_11
Description: NF1300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1300_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 8e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 40 - 298
Target Start/End: Original strand, 54770213 - 54770457
Alignment:
| Q |
40 |
gcaaaggcatgaatagtcggtcggacttagtggtagagcaccatatatcacatatataccagctgacttgtattgacagctaaatttcaagagatcaata |
139 |
Q |
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| T |
54770213 |
gcaaaggcatgaatagtcggtcggacttagtggtagagcaccatatatcacatatat----------------tgacagctaaatttcaagagatcaata |
54770296 |
T |
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| Q |
140 |
aaaaccagactatatacacactagttata--cccttttcattaacaagttttggaccattgtnnnnnnnntatgtatccaacatttaatttcttaaaata |
237 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || || |||||||||||||||||||||||||| |
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| T |
54770297 |
aaaaccagactatatacacactagttatatacccttttcattaacaagttttggaccatcgtaaaaaaaaaatatatccaacatttaatttcttaaaata |
54770396 |
T |
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| Q |
238 |
aaattgagaaaaatgttaatttagacaagttactacgatatttattgtatgtaatcctcta |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54770397 |
aaattgagaaaaatgttaatttagacaagttactacgatatttattgtatgtaatcctcta |
54770457 |
T |
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