View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1300_high_13 (Length: 296)

Name: NF1300_high_13
Description: NF1300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1300_high_13
NF1300_high_13
[»] chr5 (17 HSPs)
chr5 (62-296)||(1810197-1810431)
chr5 (59-210)||(2499766-2499918)
chr5 (59-191)||(21680586-21680717)
chr5 (59-182)||(33921333-33921455)
chr5 (59-175)||(34405975-34406090)
chr5 (61-202)||(33320685-33320825)
chr5 (63-191)||(9690991-9691117)
chr5 (63-137)||(14616437-14616510)
chr5 (63-175)||(7649950-7650060)
chr5 (147-284)||(26338117-26338256)
chr5 (59-102)||(26727252-26727295)
chr5 (63-162)||(36330976-36331074)
chr5 (147-190)||(35432330-35432373)
chr5 (65-98)||(20056160-20056193)
chr5 (59-175)||(15532204-15532318)
chr5 (59-175)||(15542386-15542500)
chr5 (80-143)||(19686443-19686506)
[»] chr3 (26 HSPs)
chr3 (59-296)||(19869102-19869339)
chr3 (59-282)||(25492036-25492259)
chr3 (61-200)||(27055090-27055230)
chr3 (59-172)||(20536337-20536452)
chr3 (108-269)||(22032373-22032535)
chr3 (59-120)||(3306147-3306209)
chr3 (64-137)||(26822048-26822120)
chr3 (63-143)||(30157805-30157885)
chr3 (59-175)||(11138574-11138688)
chr3 (59-175)||(22626316-22626430)
chr3 (63-170)||(46731585-46731691)
chr3 (113-191)||(35366486-35366562)
chr3 (59-120)||(4225621-4225681)
chr3 (65-116)||(31549573-31549625)
chr3 (59-102)||(5886751-5886794)
chr3 (59-102)||(5896735-5896778)
chr3 (59-102)||(6173117-6173160)
chr3 (59-102)||(16314357-16314400)
chr3 (59-102)||(16414523-16414566)
chr3 (59-102)||(18495351-18495394)
chr3 (59-102)||(23374497-23374540)
chr3 (149-191)||(18551895-18551937)
chr3 (63-143)||(13979643-13979722)
chr3 (59-143)||(28327720-28327802)
chr3 (59-143)||(28331045-28331127)
chr3 (67-127)||(35366573-35366632)
[»] chr7 (21 HSPs)
chr7 (59-210)||(38431601-38431753)
chr7 (62-210)||(6964495-6964644)
chr7 (61-202)||(3540930-3541069)
chr7 (59-175)||(6967274-6967389)
chr7 (59-175)||(17866357-17866472)
chr7 (59-137)||(17857884-17857962)
chr7 (63-202)||(16547221-16547359)
chr7 (63-202)||(16618303-16618441)
chr7 (63-202)||(17152173-17152310)
chr7 (59-120)||(709787-709847)
chr7 (64-177)||(28577687-28577798)
chr7 (63-151)||(36842945-36843032)
chr7 (59-102)||(2252177-2252220)
chr7 (59-102)||(23598532-23598575)
chr7 (63-137)||(24783573-24783646)
chr7 (104-177)||(17601877-17601950)
chr7 (60-175)||(294987-295101)
chr7 (63-102)||(20100950-20100989)
chr7 (65-102)||(26460771-26460808)
chr7 (59-191)||(9765912-9766042)
chr7 (59-143)||(23759613-23759696)
[»] scaffold0068 (1 HSPs)
scaffold0068 (59-191)||(33734-33865)
[»] chr8 (13 HSPs)
chr8 (59-201)||(9467283-9467425)
chr8 (59-202)||(453803-453947)
chr8 (59-202)||(39659716-39659860)
chr8 (80-200)||(13332306-13332428)
chr8 (59-202)||(5828245-5828387)
chr8 (61-172)||(12575306-12575416)
chr8 (59-102)||(24903254-24903297)
chr8 (64-120)||(5980067-5980124)
chr8 (59-98)||(17012801-17012840)
chr8 (59-98)||(17544361-17544400)
chr8 (59-101)||(22654570-22654612)
chr8 (98-191)||(12820690-12820782)
chr8 (65-98)||(17931296-17931329)
[»] chr1 (19 HSPs)
chr1 (59-200)||(49716589-49716731)
chr1 (59-188)||(49720083-49720213)
chr1 (59-202)||(34552442-34552586)
chr1 (65-173)||(18392639-18392747)
chr1 (61-173)||(6206128-6206239)
chr1 (59-175)||(10765046-10765161)
chr1 (59-175)||(13493389-13493504)
chr1 (61-143)||(50196721-50196803)
chr1 (63-175)||(13496114-13496224)
chr1 (59-102)||(17902557-17902600)
chr1 (59-102)||(20981665-20981708)
chr1 (80-172)||(16190203-16190295)
chr1 (63-102)||(24200017-24200056)
chr1 (59-102)||(37642167-37642210)
chr1 (59-121)||(32505861-32505922)
chr1 (65-102)||(16838709-16838746)
chr1 (65-102)||(16848639-16848676)
chr1 (61-101)||(14546487-14546527)
chr1 (68-136)||(15297492-15297559)
[»] chr2 (14 HSPs)
chr2 (59-202)||(29435965-29436109)
chr2 (73-204)||(13572059-13572192)
chr2 (61-173)||(38315807-38315917)
chr2 (63-172)||(23673353-23673461)
chr2 (59-137)||(36327090-36327167)
chr2 (59-172)||(32575689-32575801)
chr2 (63-151)||(16295048-16295135)
chr2 (59-152)||(24384929-24385023)
chr2 (59-191)||(32074160-32074293)
chr2 (223-284)||(40139253-40139314)
chr2 (59-102)||(18939200-18939243)
chr2 (59-102)||(22592819-22592862)
chr2 (59-175)||(31528517-31528631)
chr2 (59-143)||(40677532-40677614)
[»] chr4 (20 HSPs)
chr4 (59-187)||(33400079-33400207)
chr4 (63-173)||(15851420-15851529)
chr4 (59-287)||(13979264-13979493)
chr4 (59-173)||(19929126-19929238)
chr4 (61-175)||(647209-647322)
chr4 (61-137)||(650481-650557)
chr4 (61-202)||(37176855-37176993)
chr4 (59-175)||(12172099-12172214)
chr4 (59-102)||(3719265-3719308)
chr4 (59-172)||(2542012-2542124)
chr4 (80-137)||(21217359-21217416)
chr4 (59-120)||(8871474-8871537)
chr4 (63-172)||(26062698-26062808)
chr4 (59-102)||(3734619-3734662)
chr4 (59-102)||(14702212-14702255)
chr4 (101-172)||(24605051-24605121)
chr4 (59-102)||(49639586-49639629)
chr4 (59-133)||(48013158-48013233)
chr4 (66-102)||(11561123-11561159)
chr4 (228-284)||(21217499-21217555)
[»] chr6 (24 HSPs)
chr6 (59-191)||(11410990-11411123)
chr6 (61-188)||(33678947-33679076)
chr6 (59-202)||(12747027-12747169)
chr6 (100-202)||(35026932-35027034)
chr6 (59-175)||(14790745-14790860)
chr6 (59-175)||(14795773-14795888)
chr6 (59-191)||(28894239-28894370)
chr6 (59-102)||(2331588-2331631)
chr6 (63-172)||(19664674-19664782)
chr6 (63-120)||(22221903-22221959)
chr6 (63-120)||(22247738-22247794)
chr6 (63-175)||(1838602-1838712)
chr6 (104-172)||(15535184-15535252)
chr6 (147-191)||(15578763-15578807)
chr6 (65-120)||(23842565-23842621)
chr6 (59-102)||(22920835-22920878)
chr6 (59-175)||(13017193-13017307)
chr6 (65-120)||(23848073-23848129)
chr6 (63-143)||(27649259-27649338)
chr6 (59-102)||(17232161-17232204)
chr6 (59-143)||(28974140-28974226)
chr6 (63-151)||(17696849-17696936)
chr6 (59-172)||(32427429-32427540)
chr6 (80-143)||(34502614-34502677)
[»] scaffold0273 (1 HSPs)
scaffold0273 (61-202)||(19515-19657)
[»] scaffold0043 (2 HSPs)
scaffold0043 (61-202)||(13810-13950)
scaffold0043 (61-202)||(11467-11607)
[»] scaffold0045 (1 HSPs)
scaffold0045 (63-190)||(90306-90432)
[»] scaffold0401 (1 HSPs)
scaffold0401 (59-188)||(4491-4619)
[»] scaffold0083 (1 HSPs)
scaffold0083 (59-284)||(42735-42961)
[»] scaffold0352 (1 HSPs)
scaffold0352 (63-172)||(2627-2734)
[»] scaffold0766 (1 HSPs)
scaffold0766 (94-172)||(3635-3713)
[»] scaffold0175 (1 HSPs)
scaffold0175 (59-102)||(28428-28471)
[»] scaffold0012 (1 HSPs)
scaffold0012 (59-102)||(26647-26690)
[»] scaffold0264 (1 HSPs)
scaffold0264 (63-137)||(24193-24266)
[»] scaffold0067 (1 HSPs)
scaffold0067 (65-102)||(27668-27705)


Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 62 - 296
Target Start/End: Original strand, 1810197 - 1810431
Alignment:
Q  62 tatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaagga 161  Q
    |||||| |||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1810197 tatttgacaagtgtaccaaaagctatcgaagtagtaataaagttcgtattcacgaggaccgttgttaatttctacttaacaagttcgttaaaataaagga 1810296  T
Q  162 tgtagtaaatttatgggttgctctaggcagctgaatttggtgcataaaatgtaaatgagatgcaattaaattggtttggaatttataataaaacagataa 261  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1810297 tgtagtaaatttatgggttgccctaggcagctgaatttggtgcataaaatgtaaatgagatgcaattaaattggtttggaatttataataaaacagataa 1810396  T
Q  262 tcaagcctttgaatcctctattgttcgccgtgaat 296  Q
    ||||||||||||||||||||| |||| ||||||||    
T  1810397 tcaagcctttgaatcctctatcgttcaccgtgaat 1810431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 59 - 210
Target Start/End: Original strand, 2499766 - 2499918
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    ||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2499766 agatatttggcaagtgtaccaaaagatatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 2499865  T
Q  159 ggatgtagtaaatttatgggttgctctaggcagctgaatttgg-tgcataaaa 210  Q
    |||||||||||||||||||||||| ||| |||| || |||||| |||||||||    
T  2499866 ggatgtagtaaatttatgggttgccctaagcagttggatttggttgcataaaa 2499918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 59 - 191
Target Start/End: Complemental strand, 21680717 - 21680586
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21680717 agatatttggcaagtgtaccaaaa-ctatcgaagtagtaataaagtttgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 21680619  T
Q  159 ggatgtagtaaatttatgggttgctctaggcag 191  Q
    ||||||| |||||||||||||||| ||||||||    
T  21680618 ggatgtactaaatttatgggttgccctaggcag 21680586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 59 - 182
Target Start/End: Complemental strand, 33921455 - 33921333
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    ||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  33921455 agatattcggcaagtgtaccaaaa-ctatcgaagtagtaataaagttcgtatccacgaggaccgttgtgaatttctacttagcaagttcgttaaaattaa 33921357  T
Q  159 ggatgtagtaaatttatgggttgc 182  Q
    ||||||| ||||||||||||||||    
T  33921356 ggatgtattaaatttatgggttgc 33921333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 59 - 175
Target Start/End: Complemental strand, 34406090 - 34405975
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||  |||| ||| |||  | |||    
T  34406090 agatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacaaggaccgttgttaatttctactcggcaatttctttatcaaaaa 34405991  T
Q  159 ggatgtagtaaatttat 175  Q
    ||||||| |||||||||    
T  34405990 ggatgta-taaatttat 34405975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 61 - 202
Target Start/End: Original strand, 33320685 - 33320825
Alignment:
Q  61 atatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaagg 160  Q
    |||||||||||||||||||||| |||||||| || |||||||||||||||||||  |||| | | | ||||||||||  ||||   ||||||||||||||    
T  33320685 atatttggcaagtgtaccaaaagctatcgaagtaataataaagttcgtatccacagggactgct-tcaatttctactcggcaaaagcgttaaaataaagg 33320783  T
Q  161 atgtagtaaatttatgggttgctctaggcagctgaatttggt 202  Q
    ||||| |||||||||||||  | ||||||| ||| |||||||    
T  33320784 atgtattaaatttatgggtcaccctaggcaactggatttggt 33320825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 63 - 191
Target Start/End: Complemental strand, 9691117 - 9690991
Alignment:
Q  63 atttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaaggat 162  Q
    |||||||||||||||||||| | |||||| ||||||||||||||||||||||   ||  ||| | ||||||||||  ||||   ||||||||||||||||    
T  9691117 atttggcaagtgtaccaaaacc-atcgaagtagtaataaagttcgtatccacagagattgtt-tcaatttctactcggcaaaagcgttaaaataaaggat 9691020  T
Q  163 gtagtaaatttatgggttgctctaggcag 191  Q
    ||| |||||||||||||||| ||||||||    
T  9691019 gtattaaatttatgggttgccctaggcag 9690991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 137
Target Start/End: Original strand, 14616437 - 14616510
Alignment:
Q  63 atttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctact 137  Q
    |||||||||||| ||||||| |||||||| || |||  || ||||||||||||||||||||||||||||||||||    
T  14616437 atttggcaagtgaaccaaaa-ctatcgaagtaataaataaattcgtatccacgaggaccgttgttaatttctact 14616510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 175
Target Start/End: Original strand, 7649950 - 7650060
Alignment:
Q  63 atttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaaggat 162  Q
    ||||| |||||| ||||||| |||||||| || |||  || ||||||| |||||||||||||||||||||||||| | ||| ||| |||  | |||||||    
T  7649950 atttgacaagtgaaccaaaa-ctatcgaagtaataaataaattcgtattcacgaggaccgttgttaatttctactcaacaatttctttatcaaaaaggat 7650048  T
Q  163 gtagtaaatttat 175  Q
    ||| |||||||||    
T  7650049 gta-taaatttat 7650060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 147 - 284
Target Start/End: Complemental strand, 26338256 - 26338117
Alignment:
Q  147 cgttaaaataaaggatgtagtaaatttatgggttgctctaggcagctgaatttgg-tgc-ataaaatgtaaatgagatgcaattaaattggtttggaatt 244  Q
    ||||| ||||||||||||| |||||||||||||||| |||||||| || |||||| ||| |||||| |||||| | | | || |||| |||||||  | |    
T  26338256 cgttagaataaaggatgtattaaatttatgggttgccctaggcagttggatttggttgcaataaaaagtaaataaca-gaaaataaaatggtttgataat 26338158  T
Q  245 tataataaaacagataatcaagccttt-gaatcctctattg 284  Q
    |  | |||||||||| ||||||||||| |||||||||||||    
T  26338157 tggattaaaacagatgatcaagcctttcgaatcctctattg 26338117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 102
Target Start/End: Complemental strand, 26727295 - 26727252
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 102  Q
    |||||||||||||||||||||| |||||||||| ||||||||||    
T  26727295 agatatttggcaagtgtaccaataactatcgaagtagtaataaa 26727252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 162
Target Start/End: Complemental strand, 36331074 - 36330976
Alignment:
Q  63 atttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaaggat 162  Q
    ||||| |||||||||| ||  |||||||| || ||||||| || | ||||||||||||||||||||||||||||| | ||| || |||||  ||||||||    
T  36331074 atttgacaagtgtacctaat-ctatcgaagtaataataaaatttgcatccacgaggaccgttgttaatttctactcaacaattttgttaacttaaaggat 36330976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 190
Target Start/End: Original strand, 35432330 - 35432373
Alignment:
Q  147 cgttaaaataaaggatgtagtaaatttatgggttgctctaggca 190  Q
    |||||||||||| |||||| |||||||||||||||| |||||||    
T  35432330 cgttaaaataaatgatgtattaaatttatgggttgccctaggca 35432373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 98
Target Start/End: Complemental strand, 20056193 - 20056160
Alignment:
Q  65 ttggcaagtgtaccaaaaactatcgaattagtaa 98  Q
    ||||||||||||||||||||||||||| ||||||    
T  20056193 ttggcaagtgtaccaaaaactatcgaagtagtaa 20056160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 175
Target Start/End: Original strand, 15532204 - 15532318
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    |||||||||||| ||| ||||||  | |||||| || ||| ||| ||||| ||||||||||| ||  |||| ||||||||||||| ||| |||  | |||    
T  15532204 agatatttggcatgtgaaccaaattcgatcgaagtaataaaaaa-ttcgtttccacgaggactgtatttaacttctacttagcaatttcattattaaaaa 15532302  T
Q  159 ggatgtagtaaatttat 175  Q
    ||||||| |||||||||    
T  15532303 ggatgta-taaatttat 15532318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 175
Target Start/End: Original strand, 15542386 - 15542500
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    |||||||||||||||| ||||||  | |||||| || ||| ||| ||||| ||||||||||| ||  |||| ||||||||| ||| ||| |||  | |||    
T  15542386 agatatttggcaagtgaaccaaattcgatcgaagtaataa-aaaattcgtttccacgaggactgtatttaacttctacttaacaatttcattattaaaaa 15542484  T
Q  159 ggatgtagtaaatttat 175  Q
    ||||||| |||||||||    
T  15542485 ggatgta-taaatttat 15542500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 143
Target Start/End: Complemental strand, 19686506 - 19686443
Alignment:
Q  80 aaaactatcgaattagtaata-aagttcgtatccacgaggaccgttgttaatttctacttagcaa 143  Q
    |||||||||||| |||||| | |||||||||||||||||||| | ||||||| || |||||||||    
T  19686506 aaaactatcgaagtagtaaaataagttcgtatccacgaggactg-tgttaatctcaacttagcaa 19686443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 59 - 296
Target Start/End: Complemental strand, 19869339 - 19869102
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    ||||||||||||||||||| |||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19869339 agatatttggcaagtgtactaaaatctatcaaagtagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 19869240  T
Q  159 ggatgtagtaaatttatgggttgctctaggcagctgaatttggtgcataaaatgtaaatgagatgcaattaaattggtttggaatttataataaaacaga 258  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  19869239 ggatgtagtaaatttatgggttgccttaggcagctgaatttggtgcataaaatgtaaatgagatgcaattaaattggtttggaatttataataaaacata 19869140  T
Q  259 taatcaagcctttgaatcctctattgttcgccgtgaat 296  Q
    ||||||||||||||||||||||||||||| | ||||||    
T  19869139 taatcaagcctttgaatcctctattgttcacggtgaat 19869102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 59 - 282
Target Start/End: Complemental strand, 25492259 - 25492036
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    ||||| ||| |||||||||||||| ||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  25492259 agataattgacaagtgtaccaaaagctatcaaaatagtaataaagttcgtatccacgaggatcgttgttaatttctacttagcaagttcattaaaataaa 25492160  T
Q  159 ggatgtagtaaatttatgggttgctctaggcagctgaatttggtgcataaaatgtaaatgagatgcaattaaattggtttggaatttataataaaacaga 258  Q
     ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25492159 agatgtagtaaatttatgggttgccctaggcacctgaatttggtgcataaaatgtaaatgagatgcaattaaattggtttggaatttataataaaacaga 25492060  T
Q  259 taatcaagcctttgaatcctctat 282  Q
    |||||||| |||||||||||||||    
T  25492059 taatcaagtctttgaatcctctat 25492036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 61 - 200
Target Start/End: Complemental strand, 27055230 - 27055090
Alignment:
Q  61 atatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaagg 160  Q
    ||||||||||||  |||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27055230 atatttggcaagcataccaaaa-ctatcgaagtagtaataaatttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaaag 27055132  T
Q  161 atgtagtaaa-tttat-gggttgctctaggcagctgaatttg 200  Q
    |||||||||| ||||| ||||||| |||||||| || |||||    
T  27055131 atgtagtaaattttatggggttgccctaggcagttggatttg 27055090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 172
Target Start/End: Original strand, 20536337 - 20536452
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaat--aaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaata 156  Q
    |||||||||| |||||||||||||||||| ||| ||||||   |||| |||||||||||||||| ||  |||| |||||||||| || ||| |||  | |    
T  20536337 agatatttggaaagtgtaccaaaaactattgaagtagtaaataaaagatcgtatccacgaggactgtatttaacttctacttagaaatttcattattaaa 20536436  T
Q  157 aaggatgtagtaaatt 172  Q
    ||||||||||||||||    
T  20536437 aaggatgtagtaaatt 20536452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 269
Target Start/End: Original strand, 22032373 - 22032535
Alignment:
Q  108 tatccacgaggaccgttgttaatttcta-cttagcaagttcgttaaaataaaggatgtagtaaattt-atgggttgctctaggcagctgaatttggtgca 205  Q
    |||||||||||||  ||||||| || || || | ||| ||||||||||||| |||| || ||||||| || | |||| ||||||||   |||||||||||    
T  22032373 tatccacgaggactattgttaagttttaactcaacaatttcgttaaaataa-ggatataataaattttatagtttgccctaggcagtcaaatttggtgca 22032471  T
Q  206 taaaatgtaaatgagatgcaattaaattggtttggaatttataataaaacagataatcaagcct 269  Q
    ||||||||||||   | |||||||| |||||||| |||||||| ||||||| || || ||||||    
T  22032472 taaaatgtaaatagaacgcaattaacttggtttgaaatttatactaaaacatatgattaagcct 22032535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 3306209 - 3306147
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagt-aataaagttcgtatccacgaggac 120  Q
    |||||||||||||||||||||| |||||||||| || | ||| ||||||||||||||||||||    
T  3306209 agatatttggcaagtgtaccaataactatcgaagtaataaattaagttcgtatccacgaggac 3306147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 26822048 - 26822120
Alignment:
Q  64 tttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctact 137  Q
    ||||| ||||||||||||| |||||||| || ||||||| ||||||||||| ||||||| ||||||||| ||||    
T  26822048 tttggaaagtgtaccaaaa-ctatcgaagtaataataaaattcgtatccacaaggaccgctgttaatttttact 26822120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 143
Target Start/End: Original strand, 30157805 - 30157885
Alignment:
Q  63 atttggcaagtgtaccaaaaactatcgaattagt-aataaagttcgtatccacgaggaccgttgttaatttctacttagcaa 143  Q
    |||||||||||||||||| |||||||||| || | ||| |||||||||||||||||||| | ||||||| || |||||||||    
T  30157805 atttggcaagtgtaccaataactatcgaagtaataaattaagttcgtatccacgaggactg-tgttaatctcaacttagcaa 30157885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 175
Target Start/End: Original strand, 11138574 - 11138688
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    |||||||||||||||| ||||||  | |||||| || ||| ||||||||| ||||||||||| ||  |||| ||||||||||||| ||| |||  | |||    
T  11138574 agatatttggcaagtgaaccaaattcgatcgaagtaataa-aaagttcgtttccacgaggactgtatttaacttctacttagcaatttcattattaaaaa 11138672  T
Q  159 ggatgtagtaaatttat 175  Q
    ||||||| |||||||||    
T  11138673 ggatgta-taaatttat 11138688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 175
Target Start/End: Original strand, 22626316 - 22626430
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    |||||||||||||||| ||||||  | |||||| || ||| ||||||||| ||||||||||| ||  |||| ||||||||||||| ||| |||  | |||    
T  22626316 agatatttggcaagtgaaccaaattcgatcgaagtaataa-aaagttcgtttccacgaggactgtatttaacttctacttagcaatttcattattaaaaa 22626414  T
Q  159 ggatgtagtaaatttat 175  Q
    ||||||| |||||||||    
T  22626415 ggatgta-taaatttat 22626430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 170
Target Start/End: Complemental strand, 46731691 - 46731585
Alignment:
Q  63 atttggcaagtgtaccaaaaactatcgaattagt-aataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaagga 161  Q
    |||||||||||| || ||||||||||||| || | |||||| || ||||||||||||||||||||||| ||||||| ||||| ||| |||  | ||||||    
T  46731691 atttggcaagtgaac-aaaaactatcgaagtaatgaataaattt-gtatccacgaggaccgttgttaacttctactcagcaatttctttatcaaaaagga 46731594  T
Q  162 tgtagtaaa 170  Q
    |||| ||||    
T  46731593 tgtattaaa 46731585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 191
Target Start/End: Complemental strand, 35366562 - 35366486
Alignment:
Q  113 acgaggaccgttgttaatttctacttagcaagttcgttaaaataaaggatgtagtaaatttatgggttgctctaggcag 191  Q
    ||||||||||||||||| ||||||||||||| ||| ||| || |||||||||| ||||||| | |||||| ||||||||    
T  35366562 acgaggaccgttgttaacttctacttagcaatttcattataa-aaaggatgtattaaattt-taggttgccctaggcag 35366486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 4225621 - 4225681
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggac 120  Q
    |||||||||||||||||||| || ||||||||| ||||||||||| | ||||||| ||||||    
T  4225621 agatatttggcaagtgtacc-aatactatcgaagtagtaataaagattgtatccatgaggac 4225681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 116
Target Start/End: Complemental strand, 31549625 - 31549573
Alignment:
Q  65 ttggcaagtgtaccaaaaactatcgaattagtaata-aagttcgtatccacga 116  Q
    ||||||||||||||||||||||||||| || ||| | ||||||||||||||||    
T  31549625 ttggcaagtgtaccaaaaactatcgaagtaataaaataagttcgtatccacga 31549573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 5886751 - 5886794
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 102  Q
    ||||| |||||||||||||||| |||||||||| ||||||||||    
T  5886751 agataattggcaagtgtaccaataactatcgaagtagtaataaa 5886794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 5896735 - 5896778
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 102  Q
    ||||| |||||||||||||||| |||||||||| ||||||||||    
T  5896735 agataattggcaagtgtaccaataactatcgaagtagtaataaa 5896778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 6173117 - 6173160
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 102  Q
    ||||| |||||||||||||||| |||||||||| ||||||||||    
T  6173117 agatagttggcaagtgtaccaataactatcgaagtagtaataaa 6173160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 16314357 - 16314400
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 102  Q
    |||||||||||||||||||||| |||||| ||| ||||||||||    
T  16314357 agatatttggcaagtgtaccaataactatggaagtagtaataaa 16314400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 16414523 - 16414566
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 102  Q
    |||||||||||||||||||||| |||||| ||| ||||||||||    
T  16414523 agatatttggcaagtgtaccaataactatggaagtagtaataaa 16414566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 18495351 - 18495394
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 102  Q
    |||||||||||||||||||||| |||||| ||| ||||||||||    
T  18495351 agatatttggcaagtgtaccaataactatggaagtagtaataaa 18495394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 23374497 - 23374540
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 102  Q
    ||||| |||||||||||||||| |||||||||| ||||||||||    
T  23374497 agataattggcaagtgtaccaataactatcgaaatagtaataaa 23374540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 191
Target Start/End: Complemental strand, 18551937 - 18551895
Alignment:
Q  149 ttaaaataaaggatgtagtaaatttatgggttgctctaggcag 191  Q
    ||||||| ||||||||  |||||||||||||||||||||||||    
T  18551937 ttaaaattaaggatgtgttaaatttatgggttgctctaggcag 18551895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 143
Target Start/End: Complemental strand, 13979722 - 13979643
Alignment:
Q  63 atttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaa 143  Q
    |||||||||||| ||||||| |||||||| || |||  ||  ||| |||||||||||| | |||||||||||||| |||||    
T  13979722 atttggcaagtgaaccaaaa-ctatcgaagtaataaataaaatcgaatccacgaggactgctgttaatttctactcagcaa 13979643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 28327802 - 28327720
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaa 143  Q
    ||||| |||||||||||||||| |||||||||| |||||| |||  ||||  |||||||||| | |||||||||| | |||||||    
T  28327802 agataattggcaagtgtaccaataactatcgaagtagtaa-aaatatcgttcccacgaggactg-tgttaatttcaatttagcaa 28327720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 28331127 - 28331045
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaa 143  Q
    ||||| |||||||||||||||| |||||||||| |||||| |||  ||||  |||||||||| | |||||||||| | |||||||    
T  28331127 agataattggcaagtgtaccaataactatcgaagtagtaa-aaatatcgttcccacgaggactg-tgttaatttcaatttagcaa 28331045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 35366632 - 35366573
Alignment:
Q  67 ggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgtt 127  Q
    ||||||||||||||||   |||||| || || ||||| |||||||||||||||||||||||    
T  35366632 ggcaagtgtaccaaaata-atcgaagtaatattaaagatcgtatccacgaggaccgttgtt 35366573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 59 - 210
Target Start/End: Complemental strand, 38431753 - 38431601
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    |||||||||| ||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  38431753 agatatttggaaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccatgaggaccgttgttaatttctacttagcaagttagttaaaataaa 38431654  T
Q  159 ggatgtagtaaatttatgggttgctctaggcagctgaatttgg-tgcataaaa 210  Q
    |||||||||||||||||||||||| |||||||| || |||||| |||||||||    
T  38431653 ggatgtagtaaatttatgggttgccctaggcagttggatttggttgcataaaa 38431601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 62 - 210
Target Start/End: Complemental strand, 6964644 - 6964495
Alignment:
Q  62 tatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaagga 161  Q
    ||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6964644 tatttggtaagtgtaccaaaaactatcgaagtagtaatgaagttcgtatccacgagggccgttgttaatttctacttagcaagttcgttaaaataaagga 6964545  T
Q  162 tgtagtaaatttatgggttgctctaggcagctgaatttggt-gcataaaa 210  Q
    ||||||||||||||||||||| ||||| || || ||||||| ||||||||    
T  6964544 tgtagtaaatttatgggttgccctaggtagttggatttggtcgcataaaa 6964495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 61 - 202
Target Start/End: Original strand, 3540930 - 3541069
Alignment:
Q  61 atatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaagg 160  Q
    |||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  3540930 atatttggcaagtgtaccaaaa-ctatcaaagtagtaataaagttcgtatccacgaggaccgttgtgaacttctacttagcaagttcgttaaaataaagg 3541028  T
Q  161 atgtagtaaatttatgggttgctctaggcagctgaatttggt 202  Q
    ||||| | |||||||||||||| ||| |||| || |||||||    
T  3541029 atgta-ttaatttatgggttgccctaagcagttggatttggt 3541069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 59 - 175
Target Start/End: Complemental strand, 6967389 - 6967274
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||| ||| |||  | |||    
T  6967389 agatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctactcggcaatttctttatcaaaaa 6967290  T
Q  159 ggatgtagtaaatttat 175  Q
    ||||||| |||||||||    
T  6967289 ggatgta-taaatttat 6967274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 59 - 175
Target Start/End: Original strand, 17866357 - 17866472
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||| ||| |||  | |||    
T  17866357 agatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctactcggcaatttctttatcaaaaa 17866456  T
Q  159 ggatgtagtaaatttat 175  Q
    ||||||| |||||||||    
T  17866457 ggatgta-taaatttat 17866472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 59 - 137
Target Start/End: Original strand, 17857884 - 17857962
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctact 137  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  17857884 agatatttggcaagtgtaccaaaagctatcgaaatagtaataaagttcgtatccacgaggaccgttgttaatttctact 17857962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 63 - 202
Target Start/End: Complemental strand, 16547359 - 16547221
Alignment:
Q  63 atttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaaggat 162  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||  ||| | ||||||||||  ||||   ||||||||||||||||    
T  16547359 atttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacaaggattgtt-tcaatttctactcggcaaaagcgttaaaataaaggat 16547261  T
Q  163 gtagtaaatttatgggttgctctaggcagctgaatttggt 202  Q
    ||| |||||||| ||||||| |||||||| || |||||||    
T  16547260 gtattaaatttaagggttgccctaggcagttggatttggt 16547221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 63 - 202
Target Start/End: Original strand, 16618303 - 16618441
Alignment:
Q  63 atttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaaggat 162  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||  ||| | ||||||||||  ||||   ||||||||||||||||    
T  16618303 atttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacaaggattgtt-tcaatttctactcggcaaaagcgttaaaataaaggat 16618401  T
Q  163 gtagtaaatttatgggttgctctaggcagctgaatttggt 202  Q
    ||| |||||||| ||||||| |||||||| || |||||||    
T  16618402 gtattaaatttaagggttgccctaggcagttggatttggt 16618441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 63 - 202
Target Start/End: Complemental strand, 17152310 - 17152173
Alignment:
Q  63 atttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaaggat 162  Q
    ||||| |||||||||||||| |||||||| ||||||||||||| ||||||||   ||| ||| | ||||||||||  ||||   ||||||||||||||||    
T  17152310 atttgacaagtgtaccaaaa-ctatcgaagtagtaataaagtttgtatccacagagactgtt-tcaatttctactcggcaaaagcgttaaaataaaggat 17152213  T
Q  163 gtagtaaatttatgggttgctctaggcagctgaatttggt 202  Q
    ||| |||||||||||||||| |||||||| || |||||||    
T  17152212 gtattaaatttatgggttgccctaggcagttggatttggt 17152173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 709787 - 709847
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggac 120  Q
    |||||||||||||||||||||| |||||||||| ||||||||||  |||| |||||||||||    
T  709787 agatatttggcaagtgtaccaataactatcgaagtagtaataaatatcgt-tccacgaggac 709847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 177
Target Start/End: Original strand, 28577687 - 28577798
Alignment:
Q  64 tttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaaggatg 163  Q
    ||||||||||||||||||| ||||||||  | |||| || ||| |||| ||||||||||||||||| ||||||| |  || ||| |||| ||||| ||||    
T  28577687 tttggcaagtgtaccaaaa-ctatcgaagcaataatcaaattcatatctacgaggaccgttgttaacttctactcaataatttcattaacataaa-gatg 28577784  T
Q  164 tagtaaatttatgg 177  Q
    || |||||||||||    
T  28577785 tattaaatttatgg 28577798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 151
Target Start/End: Original strand, 36842945 - 36843032
Alignment:
Q  63 atttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgtta 151  Q
    |||||||||||| |||||||  ||||||| || |||  ||| ||| |||||| |||||||||||||||||||||| ||||| |||||||    
T  36842945 atttggcaagtgaaccaaaat-tatcgaagtaataaataagatcgaatccacaaggaccgttgttaatttctactcagcaatttcgtta 36843032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 102
Target Start/End: Complemental strand, 2252220 - 2252177
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 102  Q
    |||||||||||||||||||||| |||||||||| ||||||||||    
T  2252220 agatatttggcaagtgtaccaataactatcgaagtagtaataaa 2252177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 23598532 - 23598575
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 102  Q
    |||||||||||||||||||||| |||||||||| ||||||||||    
T  23598532 agatatttggcaagtgtaccaataactatcgaagtagtaataaa 23598575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 137
Target Start/End: Complemental strand, 24783646 - 24783573
Alignment:
Q  63 atttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctact 137  Q
    ||||| |||||| ||||||| |||||||| || |||  || || |||||||||||||||||||||||||||||||    
T  24783646 atttgacaagtgaaccaaaa-ctatcgaagtaataaataaatttgtatccacgaggaccgttgttaatttctact 24783573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 17601950 - 17601877
Alignment:
Q  104 ttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaaggatgtagtaaatttatgg 177  Q
    ||||||||||| |||||  ||||||||||||| | | ||| || |||||| ||||||||||| |||||||||||    
T  17601950 ttcgtatccacaaggactattgttaatttctaatcatcaattttgttaaactaaaggatgtattaaatttatgg 17601877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 175
Target Start/End: Complemental strand, 295101 - 294987
Alignment:
Q  60 gatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaag 159  Q
    ||||||||||||||| ||||||  | |||||| || ||| ||| || || ||||||||||| ||  |||| ||||||||||||| ||| |||  | ||||    
T  295101 gatatttggcaagtgaaccaaattcaatcgaagtaataaaaaattt-gtgtccacgaggactgtatttaacttctacttagcaatttcattattaaaaag 295003  T
Q  160 gatgtagtaaatttat 175  Q
    |||||| |||||||||    
T  295002 gatgtaataaatttat 294987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 102
Target Start/End: Complemental strand, 20100989 - 20100950
Alignment:
Q  63 atttggcaagtgtaccaaaaactatcgaattagtaataaa 102  Q
    |||||||||||||||||| |||||||||| ||||||||||    
T  20100989 atttggcaagtgtaccaataactatcgaagtagtaataaa 20100950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 102
Target Start/End: Complemental strand, 26460808 - 26460771
Alignment:
Q  65 ttggcaagtgtaccaaaaactatcgaattagtaataaa 102  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  26460808 ttggcaagtgtaccaataactatcgaagtagtaataaa 26460771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 191
Target Start/End: Complemental strand, 9766042 - 9765912
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    |||||||||||||||  ||||||| |||||||| || |||  ||| ||| |||||  ||| |||||||||||||||||| ||||  ||| |||    |||    
T  9766042 agatatttggcaagttaaccaaaa-ctatcgaagtaataaataagatcgaatccataagggccgttgttaatttctactcagcattttctttatcgaaaa 9765944  T
Q  159 ggatgtagtaaatttatgggttgctctaggcag 191  Q
    ||||||| ||||||| | |||||| ||||||||    
T  9765943 ggatgtattaaatttct-ggttgccctaggcag 9765912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 23759613 - 23759696
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaa 143  Q
    |||||||||||||||| ||||||  | |||||| || ||| ||||||||| || |||||||| ||  |||| |||||||||||||    
T  23759613 agatatttggcaagtgaaccaaattcaatcgaagtaataa-aaagttcgtttctacgaggactgtatttaacttctacttagcaa 23759696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 59 - 191
Target Start/End: Original strand, 33734 - 33865
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33734 agatatttggcaagtgtaccaaaa-ctatcgaagtagtaataaagtttgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 33832  T
Q  159 ggatgtagtaaatttatgggttgctctaggcag 191  Q
    ||||||| |||||||||||||||| ||||||||    
T  33833 ggatgtactaaatttatgggttgccctaggcag 33865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 59 - 201
Target Start/End: Complemental strand, 9467425 - 9467283
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9467425 agatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttcttcttagcaagttcgttaaaataaa 9467326  T
Q  159 ggatgtagtaaatttatgggttgctctaggcagctgaatttgg 201  Q
    |||||||||||||||||   |||| |||||||| || ||||||    
T  9467325 ggatgtagtaaatttatcaattgccctaggcagttggatttgg 9467283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 59 - 202
Target Start/End: Complemental strand, 453947 - 453803
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    ||||||||| ||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  453947 agatatttgacaagtgtaccaaaaactatggaagtactaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 453848  T
Q  159 ggatgtagtaaa-tttatgggttgctctaggcagctgaatttggt 202  Q
    |||| ||||||| |||||||||||| | |||||| || |||||||    
T  453847 ggatttagtaaattttatgggttgccccaggcagttggatttggt 453803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 59 - 202
Target Start/End: Original strand, 39659716 - 39659860
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    |||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  39659716 agatatttggcaagtgtaccgaaa-ctatcgaagtagtaataaagttcgtatccacgaggaccattgttaatttctacttagcaagttcgttaaaataaa 39659814  T
Q  159 ggatgtagtaaa-tttat-gggttgctctaggcagctgaatttggt 202  Q
    |||||||||||| ||||| ||||||| |||||||| || |||||||    
T  39659815 ggatgtagtaaattttatggggttgccctaggcagttggatttggt 39659860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 80 - 200
Target Start/End: Complemental strand, 13332428 - 13332306
Alignment:
Q  80 aaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaaggatgtagtaaa-tttat-gg 177  Q
    |||||||||||| ||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||    
T  13332428 aaaactatcgaagtagtaataaagtttgtatccatgaggaccgttgttaatttatacttagcaagttcgttaaaataaaggatgtagtaaattttatggg 13332329  T
Q  178 gttgctctaggcagctgaatttg 200  Q
    ||||| |||||||| || |||||    
T  13332328 gttgccctaggcagttggatttg 13332306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 59 - 202
Target Start/End: Complemental strand, 5828387 - 5828245
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    |||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||  |||| ||| | ||||||||||   |||   ||||||||||||    
T  5828387 agatatttggcaagtgtaccaaaagctatcgaagtagtagtaaagttcgtatccacatggactgtt-tcaatttctactcgtcaaaagcgttaaaataaa 5828289  T
Q  159 ggatgtagtaaatttatgggttgctctaggcagctgaatttggt 202  Q
    ||||| | |||||||||||||||| |||||||| || |||||||    
T  5828288 ggatgcattaaatttatgggttgccctaggcagttggatttggt 5828245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 172
Target Start/End: Original strand, 12575306 - 12575416
Alignment:
Q  61 atatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaagg 160  Q
    |||||||||||||||||||||  | |||||| || |||  || ||||||||||||||||| |||||||| ||||||| | ||||||| |||  | |||||    
T  12575306 atatttggcaagtgtaccaaattcaatcgaagtaataaataa-ttcgtatccacgaggactgttgttaacttctactcaacaagttcattattaaaaagg 12575404  T
Q  161 atgtagtaaatt 172  Q
    ||||| ||||||    
T  12575405 atgtattaaatt 12575416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 24903254 - 24903297
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 102  Q
    |||||||||||||||||||||| |||||||||| ||||||||||    
T  24903254 agatatttggcaagtgtaccaataactatcgaagtagtaataaa 24903297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 5980067 - 5980124
Alignment:
Q  64 tttggcaagtgtaccaaaaactatcgaattagtaata-aagttcgtatccacgaggac 120  Q
    |||| ||||||||||||||||||||||| || ||| | ||||||||||||||||||||    
T  5980067 tttgacaagtgtaccaaaaactatcgaagtaataacataagttcgtatccacgaggac 5980124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 17012801 - 17012840
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaa 98  Q
    |||||||||||||||||||||| |||||||||| ||||||    
T  17012801 agatatttggcaagtgtaccaataactatcgaagtagtaa 17012840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 17544400 - 17544361
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaa 98  Q
    |||||||||||||||||||||| |||||||||| ||||||    
T  17544400 agatatttggcaagtgtaccaataactatcgaagtagtaa 17544361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 101
Target Start/End: Complemental strand, 22654612 - 22654570
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataa 101  Q
    |||||||||||||||||| ||| |||||||||| |||||||||    
T  22654612 agatatttggcaagtgtatcaataactatcgaagtagtaataa 22654570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 191
Target Start/End: Original strand, 12820690 - 12820782
Alignment:
Q  98 ataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaaggatgtagtaaatttatgggttgctctaggcag 191  Q
    |||||||||||||||||  |||| ||| | ||||||||||  ||||    |||||||||||||||||  ||| |||||||||||| ||||||||    
T  12820690 ataaagttcgtatccacatggactgtt-tcaatttctactcggcaaagatgttaaaataaaggatgtgttaagtttatgggttgccctaggcag 12820782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 98
Target Start/End: Complemental strand, 17931329 - 17931296
Alignment:
Q  65 ttggcaagtgtaccaaaaactatcgaattagtaa 98  Q
    ||||||||||||||||||||||||||| ||||||    
T  17931329 ttggcaagtgtaccaaaaactatcgaagtagtaa 17931296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 59 - 200
Target Start/End: Complemental strand, 49716731 - 49716589
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    ||||| ||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49716731 agataattgacaagtgtaccaaaaactatcgaagtaataataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 49716632  T
Q  159 ggatgtagtaaa-tttatgggttgctctaggcagctgaatttg 200  Q
    |||||||||||| |||||||||||| |||||||| || |||||    
T  49716631 ggatgtagtaaattttatgggttgccctaggcagttggatttg 49716589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 59 - 188
Target Start/End: Complemental strand, 49720213 - 49720083
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    ||||| ||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49720213 agataattgacaagtgtaccaaaaactatcgaagtaataataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 49720114  T
Q  159 ggatgtagtaaa-tttatgggttgctctagg 188  Q
    || ||||||||| |||||||||||| |||||    
T  49720113 gggtgtagtaaattttatgggttgccctagg 49720083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 59 - 202
Target Start/End: Original strand, 34552442 - 34552586
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    ||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  34552442 agatatttgacaagtgtaccaaaa-ctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagtttgttaaaataaa 34552540  T
Q  159 ggatgtagtaaa-tttat-gggttgctctaggcagctgaatttggt 202  Q
    |||||||||||| ||||| ||||||| |||||||| || |||||||    
T  34552541 ggatgtagtaaattttatggggttgccctaggcagttggatttggt 34552586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 65 - 173
Target Start/End: Complemental strand, 18392747 - 18392639
Alignment:
Q  65 ttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaaggatgt 164  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  18392747 ttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagtttgttaaaataaaggatct 18392648  T
Q  165 agtaaattt 173  Q
    |||||||||    
T  18392647 agtaaattt 18392639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 61 - 173
Target Start/End: Complemental strand, 6206239 - 6206128
Alignment:
Q  61 atatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaagg 160  Q
    |||||| |||||||||| ||||  ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  6206239 atatttagcaagtgtactaaaat-tatcgaagtagtaataaagttcgtatccacgagaaccgttgttaatttctacttaacaagttcgttaaaataaagg 6206141  T
Q  161 atgtagtaaattt 173  Q
    |||||||||||||    
T  6206140 atgtagtaaattt 6206128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 59 - 175
Target Start/End: Complemental strand, 10765161 - 10765046
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||| ||| |||  | |||    
T  10765161 agatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctactcggcaatttctttatcaaaaa 10765062  T
Q  159 ggatgtagtaaatttat 175  Q
    ||||||| |||||||||    
T  10765061 ggatgta-taaatttat 10765046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 59 - 175
Target Start/End: Complemental strand, 13493504 - 13493389
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||| ||| |||  | |||    
T  13493504 agatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctactcggcaatttctttatcaaaaa 13493405  T
Q  159 ggatgtagtaaatttat 175  Q
    ||||||| |||||||||    
T  13493404 ggatgta-taaatttat 13493389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 61 - 143
Target Start/End: Original strand, 50196721 - 50196803
Alignment:
Q  61 atatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaa 143  Q
    ||||||||||||||||||||||||||| ||| || ||||||| || |||||||||||||||||||||||| || |||||||||    
T  50196721 atatttggcaagtgtaccaaaaactattgaagtaataataaaatttgtatccacgaggaccgttgttaatctcaacttagcaa 50196803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 175
Target Start/End: Complemental strand, 13496224 - 13496114
Alignment:
Q  63 atttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaaggat 162  Q
    ||||| |||||| ||||||| |||||||| || |||  || ||||||||||||||||||||||||||||||||||  |||| ||| |||  | |||||||    
T  13496224 atttgacaagtgaaccaaaa-ctatcgaagtaataaataaattcgtatccacgaggaccgttgttaatttctactcggcaatttctttatcaaaaaggat 13496126  T
Q  163 gtagtaaatttat 175  Q
    ||| |||||||||    
T  13496125 gta-taaatttat 13496114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 17902557 - 17902600
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 102  Q
    |||||||||||||||||||||| |||||||||| ||||||||||    
T  17902557 agatatttggcaagtgtaccaataactatcgaagtagtaataaa 17902600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 102
Target Start/End: Complemental strand, 20981708 - 20981665
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 102  Q
    |||||||||||||||||||||| |||||||||| ||||||||||    
T  20981708 agatatttggcaagtgtaccaataactatcgaagtagtaataaa 20981665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 172
Target Start/End: Original strand, 16190203 - 16190295
Alignment:
Q  80 aaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaaggatgtagtaaatt 172  Q
    |||||||||||| || |||  || ||||||||||||||||| ||||||||||| || |   |||   ||||||||||||||||||| ||||||    
T  16190203 aaaactatcgaagtaataaataaattcgtatccacgaggactgttgttaatttttattcgacaaaaacgttaaaataaaggatgtattaaatt 16190295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 102
Target Start/End: Original strand, 24200017 - 24200056
Alignment:
Q  63 atttggcaagtgtaccaaaaactatcgaattagtaataaa 102  Q
    |||||||||||||||||| |||||||||| ||||||||||    
T  24200017 atttggcaagtgtaccaataactatcgaagtagtaataaa 24200056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 102
Target Start/End: Complemental strand, 37642210 - 37642167
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 102  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||    
T  37642210 agatatttgacaagtgtaccaataactatcgaagtagtaataaa 37642167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 121
Target Start/End: Original strand, 32505861 - 32505922
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggacc 121  Q
    |||||||||||||||| ||||||| |||||||| || |||  ||| |||||||||||||||||    
T  32505861 agatatttggcaagtgaaccaaaa-ctatcgaagtaataaataagatcgtatccacgaggacc 32505922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 102
Target Start/End: Original strand, 16838709 - 16838746
Alignment:
Q  65 ttggcaagtgtaccaaaaactatcgaattagtaataaa 102  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  16838709 ttggcaagtgtaccaataactatcgaagtagtaataaa 16838746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 102
Target Start/End: Original strand, 16848639 - 16848676
Alignment:
Q  65 ttggcaagtgtaccaaaaactatcgaattagtaataaa 102  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  16848639 ttggcaagtgtaccaataactatcgaagtagtaataaa 16848676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 14546487 - 14546527
Alignment:
Q  61 atatttggcaagtgtaccaaaaactatcgaattagtaataa 101  Q
    |||||||||||||||| ||||||||||||||  ||||||||    
T  14546487 atatttggcaagtgtatcaaaaactatcgaagaagtaataa 14546527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 15297559 - 15297492
Alignment:
Q  68 gcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctac 136  Q
    ||||||||||||||| |||||||| ||||||   | ||| |||||||| ||||||||||||| ||||||    
T  15297559 gcaagtgtaccaaaa-ctatcgaagtagtaaatgaattcatatccacggggaccgttgttaacttctac 15297492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 59 - 202
Target Start/End: Complemental strand, 29436109 - 29435965
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    ||||| ||| |||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29436109 agataattgacaagtgtatcaaaaactatcgaagtaataataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 29436010  T
Q  159 ggatgtagtaaa-tttatgggttgctctaggcagctgaatttggt 202  Q
    |||||||||||| |||||||||||| |||||||| || |||||||    
T  29436009 ggatgtagtaaattttatgggttgcactaggcagttggatttggt 29435965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 73 - 204
Target Start/End: Original strand, 13572059 - 13572192
Alignment:
Q  73 tgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaattt--ctacttagcaagttcgttaaaataaaggatgtagtaaa 170  Q
    |||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||| ||    
T  13572059 tgtaccaaaagctatcgaagtagtaataaagttcgtatctacgaggaccgttgttaatttttctacttagcaaattcgttaaaataaaggatgtagtgaa 13572158  T
Q  171 tttatgggttgctctaggcagctgaatttggtgc 204  Q
    |||||||||||| |||||||| || ||| |||||    
T  13572159 tttatgggttgcactaggcagttggattaggtgc 13572192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 61 - 173
Target Start/End: Original strand, 38315807 - 38315917
Alignment:
Q  61 atatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaagg 160  Q
    |||||||| ||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  38315807 atatttggtaagtgtatcaaaa-ctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaa-ttctacttagcaagttcgttaaaattaagg 38315904  T
Q  161 atgtagtaaattt 173  Q
    |||||||||||||    
T  38315905 atgtagtaaattt 38315917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 172
Target Start/End: Original strand, 23673353 - 23673461
Alignment:
Q  63 atttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaaggat 162  Q
    |||||||||||| ||||||| |||||||| || |||  || |||||||||||||||||||||||||||||||||| | ||| ||| |||  | |||||||    
T  23673353 atttggcaagtgaaccaaaa-ctatcgaagtaataaataaattcgtatccacgaggaccgttgttaatttctactcaacaatttctttatcaaaaaggat 23673451  T
Q  163 gtagtaaatt 172  Q
    ||| ||||||    
T  23673452 gtattaaatt 23673461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 137
Target Start/End: Complemental strand, 36327167 - 36327090
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctact 137  Q
    |||||||||||||||| ||||||| |||||||| || |||  || |||||||||||||||||||||||||| |||||||    
T  36327167 agatatttggcaagtgaaccaaaa-ctatcgaagtaataaataaattcgtatccacgaggaccgttgttaacttctact 36327090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 59 - 172
Target Start/End: Original strand, 32575689 - 32575801
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    |||||||||||||||| ||||| | |||| ||| || |||  || |||||||||||||||||||||||||| ||||||| | | | ||||||| ||||||    
T  32575689 agatatttggcaagtgaaccaaca-ctattgaagtaataaataaattcgtatccacgaggaccgttgttaacttctactcaacgatttcgttataataaa 32575787  T
Q  159 ggatgtagtaaatt 172  Q
     |||||| ||||||    
T  32575788 tgatgtattaaatt 32575801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 151
Target Start/End: Complemental strand, 16295135 - 16295048
Alignment:
Q  63 atttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgtta 151  Q
    |||||||||||| ||||||| |||||||| || |||  ||| ||  ||||||||||||||||||||||||||||| ||||| |||||||    
T  16295135 atttggcaagtgaaccaaaa-ctatcgaagtaataaataagatcaaatccacgaggaccgttgttaatttctactcagcaatttcgtta 16295048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 152
Target Start/End: Original strand, 24384929 - 24385023
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaata--aagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaa 152  Q
    |||||||||||||||||||||||| |||||||| || ||| |  || ||||||| ||||| ||| ||| |||||||||||||||||| ||| ||||    
T  24384929 agatatttggcaagtgtaccaaaa-ctatcgaagtaataaaattaaattcgtattcacgatgactgttattaatttctacttagcaatttctttaa 24385023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 191
Target Start/End: Original strand, 32074160 - 32074293
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataa--agttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaata 156  Q
    ||||||||| ||||| ||||||||  ||||||| || ||||||  | || |||||||||| |   ||||||||||||||||||| || ||| ||||  ||    
T  32074160 agatatttgacaagtataccaaaat-tatcgaagtaataataataaatttgtatccacgatggttgttgttaatttctacttagaaatttcattaatgta 32074258  T
Q  157 aaggatgtagtaaatttatgggttgctctaggcag 191  Q
    ||||||||| |||| || |||||||| ||||||||    
T  32074259 aaggatgtattaaaattgtgggttgccctaggcag 32074293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 223 - 284
Target Start/End: Complemental strand, 40139314 - 40139253
Alignment:
Q  223 gcaattaaattggtttggaatttataataaaacagataatcaagcctttgaatcctctattg 284  Q
    |||||||| |||||||| || ||||| ||||||| || |||||||||| |||||||||||||    
T  40139314 gcaattaagttggtttgaaaattatattaaaacaaatgatcaagccttcgaatcctctattg 40139253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 102
Target Start/End: Complemental strand, 18939243 - 18939200
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 102  Q
    ||||| |||||||||||||||| |||||||||| ||||||||||    
T  18939243 agataattggcaagtgtaccaataactatcgaagtagtaataaa 18939200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 102
Target Start/End: Complemental strand, 22592862 - 22592819
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 102  Q
    |||||||||| ||||||||||| |||||||||| ||||||||||    
T  22592862 agatatttggtaagtgtaccaataactatcgaagtagtaataaa 22592819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 175
Target Start/End: Complemental strand, 31528631 - 31528517
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    |||||||||||||||| ||||||  | |||||| || ||| ||| || || ||||||||||| ||  |||| ||||||||||||| ||| |||  | |||    
T  31528631 agatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattt-gtttccacgaggactgtatttaacttctacttagcaatttcattattaaaaa 31528533  T
Q  159 ggatgtagtaaatttat 175  Q
    ||||||| |||||||||    
T  31528532 ggatgta-taaatttat 31528517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 40677532 - 40677614
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaa 143  Q
    ||||| |||||||||||||||| |||||||||| |||||| |||  ||||  |||||||||| | |||||||||| | |||||||    
T  40677532 agataattggcaagtgtaccaataactatcgaagtagtaa-aaatatcgttcccacgaggactg-tgttaatttcaatttagcaa 40677614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 59 - 187
Target Start/End: Original strand, 33400079 - 33400207
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    |||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  33400079 agatatttggcaagtgtaccaaaagctatcgaggtagtaataaagttcgtatccacgagaaccgttgttaatttctgcttagcaagttcgttaaaataaa 33400178  T
Q  159 ggatgtagtaaatttatgggttgctctag 187  Q
    ||||||| |||||||||||||||| ||||    
T  33400179 ggatgtaataaatttatgggttgccctag 33400207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 63 - 173
Target Start/End: Complemental strand, 15851529 - 15851420
Alignment:
Q  63 atttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaaggat 162  Q
    |||||||||||||||||||| |||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15851529 atttggcaagtgtaccaaaa-ctatcgaagtaatagtaaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaaggat 15851431  T
Q  163 gtagtaaattt 173  Q
    |||||||||||    
T  15851430 gtagtaaattt 15851420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 59 - 287
Target Start/End: Complemental strand, 13979493 - 13979264
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    ||||||||||||||||||| || ||||| |||| ||||||||||  | || ||||| |||||||||||||||| |||||||||||||||||| | |||||    
T  13979493 agatatttggcaagtgtactaataactaacgaagtagtaataaatattgt-tccacaaggaccgttgttaattcctacttagcaagttcgttgacataaa 13979395  T
Q  159 ggatgtagtaaatttatgggttgctctaggcagctgaatttgg-tgc-ataaaatgtaaatgagatgcaattaaattggtttggaatttataataaaaca 256  Q
    |||||||||||||||||||||| | |||||||| || |||||| ||| |||||| |||||| | | | || |||| |||||||  | ||  | |||||||    
T  13979394 ggatgtagtaaatttatgggttaccctaggcagttggatttggttgcaataaaaagtaaataaca-gaaaataaaatggtttgataattggattaaaaca 13979296  T
Q  257 gataatcaagccttt-gaatcctctattgttc 287  Q
    ||| ||||||||||| ||||||||||||||||    
T  13979295 gatgatcaagcctttcgaatcctctattgttc 13979264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 59 - 173
Target Start/End: Complemental strand, 19929238 - 19929126
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    |||||||||||||||||||||| |||||||||| ||||||||||  |||| |||||||||||||||||||||||||||||||||||||| || | |||||    
T  19929238 agatatttggcaagtgtaccaataactatcgaagtagtaataaatatcgt-tccacgaggaccgttgttaatttctacttagcaagttctttgacataaa 19929140  T
Q  159 ggatgtagtaaattt 173  Q
    |||||| ||||||||    
T  19929139 ggatgt-gtaaattt 19929126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 61 - 175
Target Start/End: Original strand, 647209 - 647322
Alignment:
Q  61 atatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaagg 160  Q
    |||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||  |||| ||| |||  | |||||    
T  647209 atatttggcaagtgtaccaaaagctatcgaagtagtaataaagtttgtatccacgaggaccgttgttaatttctactcggcaatttctttatcaaaaagg 647308  T
Q  161 atgtagtaaatttat 175  Q
    ||||| |||||||||    
T  647309 atgta-taaatttat 647322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 61 - 137
Target Start/End: Original strand, 650481 - 650557
Alignment:
Q  61 atatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctact 137  Q
    |||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  650481 atatttggcaagtgtaccaaaagctatcgaagtagtaataaagtttgtatccacgaggaccgttgttaatttctact 650557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 61 - 202
Target Start/End: Complemental strand, 37176993 - 37176855
Alignment:
Q  61 atatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaagg 160  Q
    |||||||||||||||||||||| |||||||  |||||||||||||||||||||| ||||| ||| | ||||||||||  ||||   | ||||||||||||    
T  37176993 atatttggcaagtgtaccaaaagctatcga--tagtaataaagttcgtatccacaaggactgtt-tcaatttctactcggcaaaagctttaaaataaagg 37176897  T
Q  161 atgtagtaaatttatgggttgctctaggcagctgaatttggt 202  Q
    ||||| |||||||||||||||| |||| ||| || |||||||    
T  37176896 atgtattaaatttatgggttgccctagacagttggatttggt 37176855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 175
Target Start/End: Complemental strand, 12172214 - 12172099
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    |||||||||||||||| ||||||  | |||||| || ||| |||| |||| ||||||||||| ||  |||| ||||||||||||| ||| |||  | |||    
T  12172214 agatatttggcaagtgaaccaaattcgatcgaagtaataaaaaagatcgtttccacgaggactgtatttaacttctacttagcaatttcattattaaaaa 12172115  T
Q  159 ggatgtagtaaatttat 175  Q
    ||||||| |||||||||    
T  12172114 ggatgta-taaatttat 12172099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 3719265 - 3719308
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 102  Q
    |||||||||||||||||||||| |||||||||| ||||||||||    
T  3719265 agatatttggcaagtgtaccaataactatcgaagtagtaataaa 3719308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 172
Target Start/End: Complemental strand, 2542124 - 2542012
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    |||||||||||||||||||||||  | |||||| || |||  || ||||||||||||||||| ||  |||| ||||||| ||||| ||| |||  | |||    
T  2542124 agatatttggcaagtgtaccaaagtcaatcgaagtaataaataa-ttcgtatccacgaggactgtatttaacttctactgagcaatttcattattaaaaa 2542026  T
Q  159 ggatgtagtaaatt 172  Q
    ||||||| ||||||    
T  2542025 ggatgtattaaatt 2542012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 21217359 - 21217416
Alignment:
Q  80 aaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctact 137  Q
    ||||||||| || || ||||||| ||||||| ||||||||||||| ||||||||||||    
T  21217359 aaaactatcaaagtaataataaaattcgtattcacgaggaccgttattaatttctact 21217416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 8871474 - 8871537
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaa--taaagttcgtatccacgaggac 120  Q
    |||||| |||||||||||||||||||||||||| ||||||   |||| |||| |||||||||||    
T  8871474 agatatctggcaagtgtaccaaaaactatcgaagtagtaaagaaaagatcgtctccacgaggac 8871537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 172
Target Start/End: Original strand, 26062698 - 26062808
Alignment:
Q  63 atttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgagga--ccgttgttaatttctacttagcaagttcgttaaaataaagg 160  Q
    |||||||||||| ||||||| |||||||| || |||  || ||||||||||||||||  |||||||||| ||||||| | ||| ||| |||  | |||||    
T  26062698 atttggcaagtgaaccaaaa-ctatcgaaataataaataaattcgtatccacgaggaccccgttgttaacttctactcaacaatttctttatcaaaaagg 26062796  T
Q  161 atgtagtaaatt 172  Q
    ||||| ||||||    
T  26062797 atgtattaaatt 26062808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 102
Target Start/End: Complemental strand, 3734662 - 3734619
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 102  Q
    ||||| |||||||||||||||| |||||||||| ||||||||||    
T  3734662 agataattggcaagtgtaccaataactatcgaagtagtaataaa 3734619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 102
Target Start/End: Complemental strand, 14702255 - 14702212
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 102  Q
    ||||||||||||| |||||||| |||||||||| ||||||||||    
T  14702255 agatatttggcaaatgtaccaataactatcgaagtagtaataaa 14702212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 24605051 - 24605121
Alignment:
Q  101 aagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaaggatgtagtaaatt 172  Q
    |||||||||||||| ||||| ||| | ||||||||||| ||||   ||||||||||||||||||| ||||||    
T  24605051 aagttcgtatccacaaggactgtt-tcaatttctacttggcaaaaacgttaaaataaaggatgtattaaatt 24605121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 49639586 - 49639629
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 102  Q
    ||||| |||||||||||||||| |||||||||| ||||||||||    
T  49639586 agataattggcaagtgtaccaataactatcgaagtagtaataaa 49639629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 133
Target Start/End: Original strand, 48013158 - 48013233
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaatta--gtaataaagttcgtatccacgaggaccgttgttaatttc 133  Q
    |||| ||| |||||||||| ||||||||||||| ||   |||||||||| || ||||||||||||| ||||||||||    
T  48013158 agatgtttagcaagtgtactaaaaactatcgaagtaatataataaagtttgtttccacgaggaccg-tgttaatttc 48013233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 11561159 - 11561123
Alignment:
Q  66 tggcaagtgtaccaaaaactatcgaattagtaataaa 102  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  11561159 tggcaagtgtacaaaaaactatcgaagtagtaataaa 11561123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 21217499 - 21217555
Alignment:
Q  228 taaattggtttggaatttataataaaacagataatcaagcctttgaatcctctattg 284  Q
    |||||||||||| || ||| | |||||||||||||||| ||||  ||||||||||||    
T  21217499 taaattggtttgaaaattagattaaaacagataatcaatccttcaaatcctctattg 21217555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 59 - 191
Target Start/End: Complemental strand, 11411123 - 11410990
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    ||||| ||| ||||||||||||||||||||||| || |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  11411123 agataattgacaagtgtaccaaaaactatcgaagtaataataaagttcgtatccacgagtaccattgttaatttctacttagcaagttcgttaaaataaa 11411024  T
Q  159 ggatgtagtaaa-tttatgggttgctctaggcag 191  Q
    |||||||||||| |||||||||||| ||||||||    
T  11411023 ggatgtagtaaattttatgggttgccctaggcag 11410990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 61 - 188
Target Start/End: Original strand, 33678947 - 33679076
Alignment:
Q  61 atatttggcaagtgtaccaaaa--actatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    ||||||||||||||||||||||  ||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  33678947 atatttggcaagtgtaccaaaaaaactatcgaagtagtactaaagttcatatccacgaggaccgttgttaatttctacttaacaagttagttaaaataaa 33679046  T
Q  159 ggatgtagtaaatttatgggttgctctagg 188  Q
    |||||||  ||||||||||||||| |||||    
T  33679047 ggatgtatgaaatttatgggttgccctagg 33679076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 59 - 202
Target Start/End: Complemental strand, 12747169 - 12747027
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    ||||||||| |||||||||||||| |||||||| |||||||||||||||||||||| ||||| ||| | ||||||||||  ||||   ||||||||||||    
T  12747169 agatatttgacaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacaaggactgtt-tcaatttctactcggcaaaagcgttaaaataaa 12747071  T
Q  159 ggatgtagtaaatttatgggttgctctaggcagctgaatttggt 202  Q
    ||||||| |||||||||||||||| |||||||| || |||||||    
T  12747070 ggatgtattaaatttatgggttgccctaggcagttggatttggt 12747027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 100 - 202
Target Start/End: Original strand, 35026932 - 35027034
Alignment:
Q  100 aaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaaggatgtagtaaatttatgggttgctctaggcagctgaattt 199  Q
    ||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||| || ||||    
T  35026932 aaagttcgtatccacaaggaacgttgttaatttctacttaacaagttcgttaaaataaaggatgtattaaatttatgggttgccctaggcagttggattt 35027031  T
Q  200 ggt 202  Q
    |||    
T  35027032 ggt 35027034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 59 - 175
Target Start/End: Complemental strand, 14790860 - 14790745
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||| ||| |||  | |||    
T  14790860 agatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctactcggcaatttctttatcaaaaa 14790761  T
Q  159 ggatgtagtaaatttat 175  Q
    ||||||| |||||||||    
T  14790760 ggatgta-taaatttat 14790745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 59 - 175
Target Start/End: Complemental strand, 14795888 - 14795773
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||| | |||||||||||||||||||||||||  |||| ||| |||  | |||    
T  14795888 agatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtacctacgaggaccgttgttaatttctactcggcaatttctttatcaaaaa 14795789  T
Q  159 ggatgtagtaaatttat 175  Q
    ||||||| |||||||||    
T  14795788 ggatgta-taaatttat 14795773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 59 - 191
Target Start/End: Original strand, 28894239 - 28894370
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    ||||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||  |||| ||| | ||||||||||  ||||   ||||||||||||    
T  28894239 agatatttgacaagtgtaacaaaagctatcgaagtagtaataaagttcgtatccacatggactgtt-tcaatttctactcggcaaaaacgttaaaataaa 28894337  T
Q  159 ggatgtagtaaatttatgggttgctctaggcag 191  Q
    ||||||| |||||||||||||||| ||||||||    
T  28894338 ggatgtattaaatttatgggttgccctaggcag 28894370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 102
Target Start/End: Complemental strand, 2331631 - 2331588
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 102  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  2331631 agatatttggcaagtgtaccaaaaactatcgaagtagtaataaa 2331588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 172
Target Start/End: Original strand, 19664674 - 19664782
Alignment:
Q  63 atttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaaggat 162  Q
    |||||||||||| ||||||| |||||||| || |||  || || ||||||||||||||||||||| ||||||||| | ||| ||| |||  | |||||||    
T  19664674 atttggcaagtgaaccaaaa-ctatcgaagtaataaataaatttgtatccacgaggaccgttgtttatttctactcaacaatttctttatcaaaaaggat 19664772  T
Q  163 gtagtaaatt 172  Q
    ||| ||||||    
T  19664773 gtattaaatt 19664782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 22221959 - 22221903
Alignment:
Q  63 atttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggac 120  Q
    |||||||||||||||||||| |||||||| |||||||||| ||||| |||||||||||    
T  22221959 atttggcaagtgtaccaaaagctatcgaagtagtaataaa-ttcgtttccacgaggac 22221903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 22247794 - 22247738
Alignment:
Q  63 atttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggac 120  Q
    |||||||||||||||||||| |||||||| |||||||||| ||||| |||||||||||    
T  22247794 atttggcaagtgtaccaaaagctatcgaagtagtaataaa-ttcgtttccacgaggac 22247738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 175
Target Start/End: Complemental strand, 1838712 - 1838602
Alignment:
Q  63 atttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaaggat 162  Q
    |||||||||||| |||||||  ||||||| || |||  || ||||||||||| ||||||||||||||||||||||  |||| ||| |||  | |||||||    
T  1838712 atttggcaagtgaaccaaaat-tatcgaagtaataaataaattcgtatccacaaggaccgttgttaatttctactcggcaatttctttatcaaaaaggat 1838614  T
Q  163 gtagtaaatttat 175  Q
    ||| |||||||||    
T  1838613 gta-taaatttat 1838602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 15535252 - 15535184
Alignment:
Q  104 ttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaaggatgtagtaaatt 172  Q
    |||||||||||||||||||||||||| ||||||| ||| | ||| ||| || |||||||||| ||||||    
T  15535252 ttcgtatccacgaggaccgttgttaacttctactcagccatttctttataaaaaaggatgtattaaatt 15535184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 15578763 - 15578807
Alignment:
Q  147 cgttaaaataaaggatgtagtaaatttatgggttgctctaggcag 191  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||    
T  15578763 cgttaaaataaaggatgtattaaatttatgggttgccctaggcag 15578807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 23842565 - 23842621
Alignment:
Q  65 ttggcaagtgtaccaaaaactatcgaattagtaata-aagttcgtatccacgaggac 120  Q
    ||||||||||||||||||||||||||| || ||| | ||||||||||||||||||||    
T  23842565 ttggcaagtgtaccaaaaactatcgaaataataaaataagttcgtatccacgaggac 23842621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 102
Target Start/End: Complemental strand, 22920878 - 22920835
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 102  Q
    |||||||||||||||||||||| |||||||||| ||||||||||    
T  22920878 agatatttggcaagtgtaccaataactatcgaagtagtaataaa 22920835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 175
Target Start/End: Original strand, 13017193 - 13017307
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    |||||||||||||||| ||||||  | |||||| || ||| ||||||||| |||||||||||  |  |||| ||||||||||||| ||| |||  | |||    
T  13017193 agatatttggcaagtgaaccaaattcgatcgaagtaataa-aaagttcgtttccacgaggactatatttaacttctacttagcaatttcattattaaaaa 13017291  T
Q  159 ggatgtagtaaatttat 175  Q
    ||||||| |||||||||    
T  13017292 ggatgta-taaatttat 13017307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 23848129 - 23848073
Alignment:
Q  65 ttggcaagtgtaccaaaaactatcgaattagtaata-aagttcgtatccacgaggac 120  Q
    ||||||||||||||||||||||||||  || ||| | ||||||||||||||||||||    
T  23848129 ttggcaagtgtaccaaaaactatcgacataataaaataagttcgtatccacgaggac 23848073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 143
Target Start/End: Complemental strand, 27649338 - 27649259
Alignment:
Q  63 atttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaa 143  Q
    |||||||||||| || |||| |||||||| || |||  ||| ||| ||||||||||||||||||||||| ||||| |||||    
T  27649338 atttggcaagtgaactaaaa-ctatcgaagtaataaataagatcgaatccacgaggaccgttgttaattcctactcagcaa 27649259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 102
Target Start/End: Complemental strand, 17232204 - 17232161
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 102  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||    
T  17232204 agatatttgacaagtgtaccaataactatcgaagtagtaataaa 17232161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 28974140 - 28974226
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataa--agttcgtatccacgaggaccgttgttaatttctacttagcaa 143  Q
    |||||||||||||||||| | |||||||||||| || ||||||  | |  |||||||||||||  ||||||||| || |||||||||    
T  28974140 agatatttggcaagtgtatccaaaactatcgaagtaataataataaatctgtatccacgaggattgttgttaatgtcaacttagcaa 28974226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 151
Target Start/End: Complemental strand, 17696936 - 17696849
Alignment:
Q  63 atttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctact-tagcaagttcgtta 151  Q
    |||||||||||||||||  |||||||||| ||||||||||  |||| ||||| ||||| | |||||||||| | | ||||||||||||||    
T  17696936 atttggcaagtgtaccaccaactatcgaagtagtaataaatatcgt-tccacaaggactg-tgttaatttcaattctagcaagttcgtta 17696849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 172
Target Start/End: Complemental strand, 32427540 - 32427429
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    |||||||||| ||||| ||||||| |||||||| || |||  || || ||||| ||||||||||||||||| ||||||| ||||| ||| |||  | |||    
T  32427540 agatatttggtaagtgaaccaaaa-ctatcgaagtaataaataaatttgtatctacgaggaccgttgttaa-ttctactcagcaatttctttatcaaaaa 32427443  T
Q  159 ggatgtagtaaatt 172  Q
     |||||| ||||||    
T  32427442 agatgtattaaatt 32427429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 143
Target Start/End: Complemental strand, 34502677 - 34502614
Alignment:
Q  80 aaaactatcgaattagtaata-aagttcgtatccacgaggaccgttgttaatttctacttagcaa 143  Q
    |||||||||||| |||||| | |||||||||||||||||||| | ||||||| || |||||||||    
T  34502677 aaaactatcgaagtagtaaaataagttcgtatccacgaggactg-tgttaatctcaacttagcaa 34502614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0273 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 61 - 202
Target Start/End: Original strand, 19515 - 19657
Alignment:
Q  61 atatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaagg 160  Q
    |||||||||||||||||||||| || || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19515 atatttggcaagtgtaccaaaa-ctgtcaaagtagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaagg 19613  T
Q  161 atgtagtaaa-tttat-gggttgctctaggcagctgaatttggt 202  Q
    |||||||||| ||||| ||||||| |||||||| || |||||||    
T  19614 atgtagtaaattttatggggttgccctaggcagttggatttggt 19657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 61 - 202
Target Start/End: Complemental strand, 13950 - 13810
Alignment:
Q  61 atatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaagg 160  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||  |||| ||| | ||||||||||  ||||   ||||||||||||||    
T  13950 atatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacagggactgtt-tcaatttctactcggcaaaagcgttaaaataaagg 13852  T
Q  161 atgtagtaaatttatgggttgctctaggcagctgaatttggt 202  Q
    ||||| |||||| ||||||||| |||||||| || |||||||    
T  13851 atgtattaaattgatgggttgccctaggcagttggatttggt 13810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 61 - 202
Target Start/End: Complemental strand, 11607 - 11467
Alignment:
Q  61 atatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaagg 160  Q
    |||||||||||||||||||||| ||||||||  |||||||||||||||||||||  |||| ||| | ||||| ||||  ||||   ||||||||||||||    
T  11607 atatttggcaagtgtaccaaaagctatcgaagcagtaataaagttcgtatccacagggactgtt-tcaatttatactcggcaaaagcgttaaaataaagg 11509  T
Q  161 atgtagtaaatttatgggttgctctaggcagctgaatttggt 202  Q
    ||||| |||||||||||||| | |||||||| || |||||||    
T  11508 atgtattaaatttatgggtttccctaggcagttggatttggt 11467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 63 - 190
Target Start/End: Original strand, 90306 - 90432
Alignment:
Q  63 atttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaaggat 162  Q
    |||||||||||||||||||| |||||||| || |||||||||||||||||||  |||| ||| | ||||||||||  ||||   ||||||||||||||||    
T  90306 atttggcaagtgtaccaaaagctatcgaagtactaataaagttcgtatccacatggactgtt-tcaatttctactcggcaaaagcgttaaaataaaggat 90404  T
Q  163 gtagtaaatttatgggttgctctaggca 190  Q
    ||| |||||||||||||||| |||||||    
T  90405 gtattaaatttatgggttgccctaggca 90432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0401 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0401
Description:

Target: scaffold0401; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 59 - 188
Target Start/End: Complemental strand, 4619 - 4491
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||  |||| | | | ||||||||||  | ||   ||||||||||||    
T  4619 agatatttggcaagtgtacaaaaaactatcgaagtagtaataaagtttgtatccacagggactg-tatcaatttctactcggaaaaagcgttaaaataaa 4521  T
Q  159 ggatgtagtaaatttatgggttgctctagg 188  Q
    ||||||| |||||||||||||||| |||||    
T  4520 ggatgtattaaatttatgggttgccctagg 4491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 59 - 284
Target Start/End: Complemental strand, 42961 - 42735
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaa 158  Q
    ||||||||| |||||||||||||| |||||||| | |||||||||||||||| |||  |||| ||| | || |||||||  ||||   ||||||||||||    
T  42961 agatatttgtcaagtgtaccaaaagctatcgaagtcgtaataaagttcgtattcacagggactgtt-tcaacttctactcggcaaaaacgttaaaataaa 42863  T
Q  159 ggatgtagtaaatttatgggttgctctaggcagctgaatttgg-tgc-ataaaatgtaaatgagatgcaattaaattggtttggaatttataataaaaca 256  Q
    ||||||| ||||||||||| || | |||||||  || |||||| ||| |||||| |||||| | | | || |||| |||||||  | ||  | |||||||    
T  42862 ggatgtattaaatttatggatttccctaggcatttggatttggttgcaataaaaagtaaataaca-gaaaataaaatggtttgataattggattaaaaca 42764  T
Q  257 gataatcaagccttt-gaatcctctattg 284  Q
    ||| ||||||||||| |||||||||||||    
T  42763 gatgatcaagcctttcgaatcctctattg 42735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 172
Target Start/End: Original strand, 2627 - 2734
Alignment:
Q  63 atttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaaggat 162  Q
    |||||||||||| ||||||| |||||||| || |||  ||| ||||||||||||||||||||||||| ||||||| ||||| |||||||  | |||||||    
T  2627 atttggcaagtggaccaaaa-ctatcgaagtaataaataagatcgtatccacgaggaccgttgttaacttctactcagcaatttcgttatca-aaaggat 2724  T
Q  163 gtagtaaatt 172  Q
    ||| ||||||    
T  2725 gtattaaatt 2734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0766 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0766
Description:

Target: scaffold0766; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 172
Target Start/End: Complemental strand, 3713 - 3635
Alignment:
Q  94 agtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaaggatgtagtaaatt 172  Q
    ||||||||| || ||||||||||||||||||||||| ||||||| ||||| ||  |||| ||||| |||||| ||||||    
T  3713 agtaataaaatttgtatccacgaggaccgttgttaacttctactcagcaatttaattaagataaatgatgtattaaatt 3635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0175 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 28428 - 28471
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 102  Q
    |||||||||||||||||||||| |||||||||| ||||||||||    
T  28428 agatatttggcaagtgtaccaataactatcgaagtagtaataaa 28471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 26647 - 26690
Alignment:
Q  59 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 102  Q
    |||||||||||||||||||||| |||||||||| ||||||||||    
T  26647 agatatttggcaagtgtaccaataactatcgaagtagtaataaa 26690  T

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Target: scaffold0264 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 137
Target Start/End: Original strand, 24193 - 24266
Alignment:
Q  63 atttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggaccgttgttaatttctact 137  Q
    |||||||||||||||||||| |||||||| |||||||||| || || ||||||||||| ||  |||| |||||||    
T  24193 atttggcaagtgtaccaaaagctatcgaagtagtaataaa-tttgtttccacgaggactgtatttaacttctact 24266  T

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Target: scaffold0067 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 102
Target Start/End: Complemental strand, 27705 - 27668
Alignment:
Q  65 ttggcaagtgtaccaaaaactatcgaattagtaataaa 102  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  27705 ttggcaagtgtaccaataactatcgaagtagtaataaa 27668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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