View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1300_high_21 (Length: 253)
Name: NF1300_high_21
Description: NF1300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1300_high_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 30 - 253
Target Start/End: Original strand, 30782265 - 30782486
Alignment:
| Q |
30 |
gtaacacggaattgttgcaactgactccgttcaagaaaacaactctgtccattccatatttttaaaagacttttggaagtgtatttcttgaatatatttt |
129 |
Q |
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| T |
30782265 |
gtaacacggaattgttgcaaccgactccgttcaagaaaacaactctgtccattccatatttttaaaagatttttggaagtatatttctcgaatatatttt |
30782364 |
T |
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| Q |
130 |
tgttcgaaatatacattaagagacacacaactatgannnnnnnnnnnccttccaaatttgatcattggaagtgattaagaagtttgtgaagtttcagatc |
229 |
Q |
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| T |
30782365 |
tgttcgaaatatacattaagagacacacaactatga--tttttttttccttccaaatttgttcattggaagtgattaagaagtttgtgaagtttcagatc |
30782462 |
T |
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| Q |
230 |
aatttcttgtatttaagaaacaca |
253 |
Q |
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| T |
30782463 |
aatttcttgtatttaagaaacaca |
30782486 |
T |
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