View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1300_high_25 (Length: 251)
Name: NF1300_high_25
Description: NF1300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1300_high_25 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 43486986 - 43486752
Alignment:
| Q |
30 |
aatcattcgtcaaacccgctgttaggacaggtttgtttagatatggtcaaaaatgagttgcagttaccaacctcttatcaagtctatcatcctcaagaga |
129 |
Q |
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| T |
43486986 |
aatcattcatcaaacccgctgttaggacaggtttgtttagatatggtcaaaaatgagttgcagttaccaaccacttatcaagtctatcatcctcaagaga |
43486887 |
T |
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| Q |
130 |
gtgtgatggtctcaaagtatcaataataaactattagaaaaataagtatttagcaggt------------attgtt-tttggatgttcttgtgctttgca |
216 |
Q |
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| T |
43486886 |
gtgtgatggtctcaaagtatcaataataaactattagaaaaataagtatttagcaggttattttttttggattgttaattggatgttcttgtgctttgca |
43486787 |
T |
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| Q |
217 |
ttgcaacatatctttgcttttttatattatgttat |
251 |
Q |
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| T |
43486786 |
ttgcaacatatctttgcttttttatattatgttat |
43486752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 185
Target Start/End: Complemental strand, 43478687 - 43478579
Alignment:
| Q |
78 |
aaaaatgagttgcagttaccaacctc-ttatcaagtctatcatcctcaagagagtgtgatggtctcaaagtatcaataataaactattagaaaaataagt |
176 |
Q |
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| T |
43478687 |
aaaaatgagttgcagtttcgaacctccttgttaagtctttcatcctcaagagagtatgatggtctcaacgtatcgataaagaactattagacaaataagt |
43478588 |
T |
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| Q |
177 |
atttagcag |
185 |
Q |
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| T |
43478587 |
gtttagcag |
43478579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 171
Target Start/End: Complemental strand, 43467530 - 43467444
Alignment:
| Q |
85 |
agttgcagttaccaacct-cttatcaagtctatcatc-ctcaagagagtgtgatggtctcaaagtatcaataataaactattagaaaaa |
171 |
Q |
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| T |
43467530 |
agttgcagtttccatccttcttatcaagtctatcatcactcaatagagtttgctggtctgaaagtaaca--aaaaaactattagaaaaa |
43467444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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