View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1300_high_28 (Length: 240)

Name: NF1300_high_28
Description: NF1300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1300_high_28
NF1300_high_28
[»] chr3 (8 HSPs)
chr3 (8-175)||(25491857-25492014)
chr3 (29-175)||(19868636-19868778)
chr3 (29-169)||(4250045-4250182)
chr3 (40-137)||(3305540-3305635)
chr3 (40-137)||(28327134-28327229)
chr3 (40-137)||(28330459-28330554)
chr3 (29-63)||(20536898-20536932)
chr3 (4-36)||(19868786-19868818)
[»] chr5 (6 HSPs)
chr5 (33-175)||(1810735-1810873)
chr5 (29-140)||(33920829-33920938)
chr5 (29-137)||(9690453-9690559)
chr5 (1-31)||(3194967-3194997)
chr5 (1-31)||(34653035-34653065)
chr5 (1-30)||(2453142-2453171)
[»] scaffold0043 (1 HSPs)
scaffold0043 (29-169)||(13251-13388)
[»] scaffold0083 (2 HSPs)
scaffold0083 (36-169)||(28981-29111)
scaffold0083 (36-169)||(52778-52908)
[»] chr6 (3 HSPs)
chr6 (40-169)||(35027466-35027592)
chr6 (29-137)||(12746496-12746602)
chr6 (1-36)||(3827096-3827131)
[»] chr4 (4 HSPs)
chr4 (29-169)||(56089636-56089773)
chr4 (40-169)||(19928563-19928689)
chr4 (40-137)||(13978824-13978919)
chr4 (29-61)||(11560578-11560610)
[»] scaffold0273 (1 HSPs)
scaffold0273 (40-169)||(20018-20144)
[»] chr8 (2 HSPs)
chr8 (29-137)||(5827717-5827823)
chr8 (43-131)||(14627143-14627229)
[»] chr7 (4 HSPs)
chr7 (29-169)||(3541490-3541625)
chr7 (83-137)||(44018166-44018220)
chr7 (87-137)||(17601382-17601432)
chr7 (1-31)||(22083722-22083752)
[»] scaffold0911 (1 HSPs)
scaffold0911 (40-137)||(4255-4350)
[»] chr2 (2 HSPs)
chr2 (40-137)||(40678105-40678200)
chr2 (1-31)||(30719583-30719613)
[»] chr1 (2 HSPs)
chr1 (40-137)||(23441617-23441712)
chr1 (40-137)||(33898016-33898111)


Alignment Details
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 25492014 - 25491857
Alignment:
Q  8 agttagggttaatagtcatgcaaagcaatgaacacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttcaaacaaattacatg 107  Q
    |||||||||||||||||||      ||||||||||||||||| ||||||||||||||||||||| |||||||||| |   ||||||||||||||||||||    
T  25492014 agttagggttaatagtcat------caatgaacacaaataattttgaataaagactaggattccgttgaattaaata---gagttcaaacaaattacatg 25491924  T
Q  108 gttcatagatcacaatagattcatctcatgactctgattaatctaagagcttaactactcatgttcat 175  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||    
T  25491923 gttcatagatcacaatagattcatctcatggctc-gattaatctaagagcttagctactcatgttcat 25491857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 29 - 175
Target Start/End: Complemental strand, 19868778 - 19868636
Alignment:
Q  29 aaagcaatgaacacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttcaaacaaattacatggttcatagatcacaatagatt 128  Q
    |||||||  ||||||||||||  ||||||||||||||||||||||||||||||    ||||||| |||||||||||||||||||||||||||||||||||    
T  19868778 aaagcaacaaacacaaataattctgaataaagactaggattccattgaattaag---gagagtttaaacaaattacatggttcatagatcacaatagatt 19868682  T
Q  129 catctcatgactctgattaatctaagagcttaactactcatgttcat 175  Q
    ||||||||||||| |||||||||| ||||||| ||||||||||||||    
T  19868681 catctcatgactc-gattaatctaggagcttagctactcatgttcat 19868636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 169
Target Start/End: Complemental strand, 4250182 - 4250045
Alignment:
Q  29 aaagcaatgaacacaaataatcttgaataaagactaggattccattgaattaaaaaagag-agttcaaacaaattacatggttcatagatcacaatagat 127  Q
    |||||||||||||||||||||  ||||||||||||||| || ||||||  | ||| |||| | ||  |||||||||||||||||| ||||||||| ||||    
T  4250182 aaagcaatgaacacaaataattctgaataaagactaggttttcattgatgtcaaagagagtactt--aacaaattacatggttcacagatcacaa-agat 4250086  T
Q  128 tcatctcatgactctgattaatctaagagcttaactactcat 169  Q
    ||||||||||||| | || |||||||||| ||| ||||||||    
T  4250085 tcatctcatgact-taatcaatctaagagtttagctactcat 4250045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 137
Target Start/End: Complemental strand, 3305635 - 3305540
Alignment:
Q  40 cacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttca-aacaaattacatggttcatagatcacaatagattcatctcatg 137  Q
    ||||||||||  ||||||||||||||| || ||||||  | |||  ||||||||  |||||||||||||||||| ||||||||| ||||||||||||||    
T  3305635 cacaaataattctgaataaagactaggttttcattgatgtcaaa--gagagttcttaacaaattacatggttcacagatcacaa-agattcatctcatg 3305540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 137
Target Start/End: Complemental strand, 28327229 - 28327134
Alignment:
Q  40 cacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttca-aacaaattacatggttcatagatcacaatagattcatctcatg 137  Q
    ||||||||||  ||||||||||||||| || ||||||  | |||  ||||||||  |||||||||||||||||| ||||||||| ||||||||||||||    
T  28327229 cacaaataattctgaataaagactaggttttcattgatgtcaaa--gagagttcttaacaaattacatggttcacagatcacaa-agattcatctcatg 28327134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 137
Target Start/End: Complemental strand, 28330554 - 28330459
Alignment:
Q  40 cacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttca-aacaaattacatggttcatagatcacaatagattcatctcatg 137  Q
    ||||||||||  ||||||||||||||| || ||||||  | |||  ||||||||  |||||||||||||||||| ||||||||| ||||||||||||||    
T  28330554 cacaaataattctgaataaagactaggttttcattgatgtcaaa--gagagttcttaacaaattacatggttcacagatcacaa-agattcatctcatg 28330459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 63
Target Start/End: Original strand, 20536898 - 20536932
Alignment:
Q  29 aaagcaatgaacacaaataatcttgaataaagact 63  Q
    ||||||||||||||||||||| |||||||||||||    
T  20536898 aaagcaatgaacacaaataattttgaataaagact 20536932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 19868818 - 19868786
Alignment:
Q  4 aagaagttagggttaatagtcatgcaaagcaat 36  Q
    |||||| ||||||||||||||||||||||||||    
T  19868818 aagaagctagggttaatagtcatgcaaagcaat 19868786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 33 - 175
Target Start/End: Original strand, 1810735 - 1810873
Alignment:
Q  33 caatgaacacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttcaaacaaattacatggttcatagatcacaatagattcatc 132  Q
    |||||||||||||||||  | |||||||||||||| ||||||||||||||   |||| |||||||||||| |||| ||||||||||| ||||||||||||    
T  1810735 caatgaacacaaataattctcaataaagactaggaatccattgaattaaa---gagacttcaaacaaatttcatgattcatagatcataatagattcatc 1810831  T
Q  133 tcatgactctgattaatctaagagcttaactactcatgttcat 175  Q
    ||||||||| |||||||||| |||||||||||||||| |||||    
T  1810832 tcatgactc-gattaatctaggagcttaactactcatattcat 1810873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 29 - 140
Target Start/End: Complemental strand, 33920938 - 33920829
Alignment:
Q  29 aaagcaatgaacacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttca-aacaaattacatggttcatagatcacaatagat 127  Q
    |||||||||||||||||||||  ||||||||||||||| || ||||||  | |||  ||||||||  |||||||||||||||||| ||||||||| ||||    
T  33920938 aaagcaatgaacacaaataattctgaataaagactaggttttcattgatgtcaaa--gagagttcttaacaaattacatggttcacagatcacaa-agat 33920842  T
Q  128 tcatctcatgact 140  Q
    |||||||||||||    
T  33920841 tcatctcatgact 33920829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 137
Target Start/End: Complemental strand, 9690559 - 9690453
Alignment:
Q  29 aaagcaatgaacacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttc-aaacaaattacatggttcatagatcacaatagat 127  Q
    |||||||||||||||||||||  ||||||||||||||| || ||||||  |   |||||||||||  ||||||||| |||||||| | ||||||| ||||    
T  9690559 aaagcaatgaacacaaataattatgaataaagactaggttttcattga--tgtcaaagagagttcgtaacaaattatatggttcacaaatcacaa-agat 9690463  T
Q  128 tcatctcatg 137  Q
    ||||||||||    
T  9690462 tcatctcatg 9690453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 3194997 - 3194967
Alignment:
Q  1 tgcaagaagttagggttaatagtcatgcaaa 31  Q
    |||||||||||||||||||||||||||||||    
T  3194997 tgcaagaagttagggttaatagtcatgcaaa 3194967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 34653035 - 34653065
Alignment:
Q  1 tgcaagaagttagggttaatagtcatgcaaa 31  Q
    |||||||||||||||||||||||||||||||    
T  34653035 tgcaagaagttagggttaatagtcatgcaaa 34653065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 2453171 - 2453142
Alignment:
Q  1 tgcaagaagttagggttaatagtcatgcaa 30  Q
    ||||||||||||||||||||||||||||||    
T  2453171 tgcaagaagttagggttaatagtcatgcaa 2453142  T

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Target: scaffold0043 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 169
Target Start/End: Complemental strand, 13388 - 13251
Alignment:
Q  29 aaagcaatgaacacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttca-aacaaattacatggttcatagatcacaatagat 127  Q
    |||||||||||||||||||||  ||||||||||||||| || ||||||  | |||  ||||||||  |||||||||||||||||| ||||||||| ||||    
T  13388 aaagcaatgaacacaaataattctgaataaagactaggttttcattgatgtcaaa--gagagttcttaacaaattacatggttcacagatcacaa-agat 13292  T
Q  128 tcatctcatgactctgattaatctaagagcttaactactcat 169  Q
    |||||||||| || | || |||||||||| ||| ||||||||    
T  13291 tcatctcatggct-taatcaatctaagagtttagctactcat 13251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 169
Target Start/End: Complemental strand, 29111 - 28981
Alignment:
Q  36 tgaacacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttca-aacaaattacatggttcatagatcacaatagattcatctc 134  Q
    ||||||||||||||  ||||||||||||||| || ||||||  | |||  ||||||||  |||||||||||||||||| ||||||||| |||||||||||    
T  29111 tgaacacaaataattctgaataaagactaggttttcattgatgtcaaa--gagagttcttaacaaattacatggttcacagatcacaa-agattcatctc 29015  T
Q  135 atgactctgattaatctaagagcttaactactcat 169  Q
    ||| || | || |||||||||| ||| ||||||||    
T  29014 atggct-taatcaatctaagagtttagctactcat 28981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 36 - 169
Target Start/End: Complemental strand, 52908 - 52778
Alignment:
Q  36 tgaacacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttca-aacaaattacatggttcatagatcacaatagattcatctc 134  Q
    ||||||||||||||  ||||||||||||||| || ||||||  | |||  ||||||||  |||||||||||||||||| ||||||||| |||| ||||||    
T  52908 tgaacacaaataattctgaataaagactaggttttcattgatgtcaaa--gagagttcttaacaaattacatggttcacagatcacaa-agatacatctc 52812  T
Q  135 atgactctgattaatctaagagcttaactactcat 169  Q
    ||| || | || |||||||||| ||| ||||||||    
T  52811 atgtct-taatcaatctaagagtttagctactcat 52778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 35027466 - 35027592
Alignment:
Q  40 cacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttca-aacaaattacatggttcatagatcacaatagattcatctcatga 138  Q
    ||||||||||  ||||||||||||||| || ||||||  | |||  ||||||||  |||||||||||||||||| ||||||||| ||||||||||||||     
T  35027466 cacaaataattctgaataaagactaggttttcattgatgtcaaa--gagagttcttaacaaattacatggttcacagatcacaa-agattcatctcatgg 35027562  T
Q  139 ctctgattaatctaagagcttaactactcat 169  Q
    || | || |||||||||||||| ||||||||    
T  35027563 ct-taatcaatctaagagcttagctactcat 35027592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 137
Target Start/End: Complemental strand, 12746602 - 12746496
Alignment:
Q  29 aaagcaatgaacacaaataatcttgaataaagactaggattccattgaattaaaaaagagagtt-caaacaaattacatggttcatagatcacaatagat 127  Q
    |||||||||||||||||||||  ||||||||||||||| || ||||||  |   ||||||||||   |||||||||||||||||| ||||||||| ||||    
T  12746602 aaagcaatgaacacaaataattctgaataaagactaggttttcattga--tgtcaaagagagttattaacaaattacatggttcacagatcacaa-agat 12746506  T
Q  128 tcatctcatg 137  Q
     |||||||||    
T  12746505 ccatctcatg 12746496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 3827096 - 3827131
Alignment:
Q  1 tgcaagaagttagggttaatagtcatgcaaagcaat 36  Q
    |||||||||||||||||||||||||| |||||||||    
T  3827096 tgcaagaagttagggttaatagtcatacaaagcaat 3827131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 169
Target Start/End: Original strand, 56089636 - 56089773
Alignment:
Q  29 aaagcaatgaacacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttc-aaacaaattacatggttcatagatcacaatagat 127  Q
    |||||||||||||||||||||  ||||||||||||||| || ||||||  |   |||||||||||  ||||||||||||| |||| ||||||||| ||||    
T  56089636 aaagcaatgaacacaaataattctgaataaagactaggttttcattga--tgtcaaagagagttcttaacaaattacatgattcacagatcacaa-agat 56089732  T
Q  128 tcatctcatgactctgattaatctaagagcttaactactcat 169  Q
    |||| ||||| || | || |||||||||| ||| ||||||||    
T  56089733 tcatttcatggct-taatcaatctaagagtttagctactcat 56089773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 169
Target Start/End: Complemental strand, 19928689 - 19928563
Alignment:
Q  40 cacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttca-aacaaattacatggttcatagatcacaatagattcatctcatga 138  Q
    ||||||||||  ||||||||||||||| || ||||||  | |||  ||||||||  |||||||||||||||||| ||||||||| ||||||||||||| |    
T  19928689 cacaaataattctgaataaagactaggttttcattgatgtcaaa--gagagttcttaacaaattacatggttcacagatcacaa-agattcatctcatta 19928593  T
Q  139 ctctgattaatctaagagcttaactactcat 169  Q
    || | || |||||||||| ||| ||||||||    
T  19928592 ct-taatcaatctaagagtttagctactcat 19928563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 137
Target Start/End: Complemental strand, 13978919 - 13978824
Alignment:
Q  40 cacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttca-aacaaattacatggttcatagatcacaatagattcatctcatg 137  Q
    ||||||||||  ||||||||||||||| || ||||||  | |||  ||||||||  |||||||||||||||||| ||||||||| ||||||||||||||    
T  13978919 cacaaataattctgaataaagactaggttttcattgatgtcaaa--gagagttcttaacaaattacatggttcacagatcacaa-agattcatctcatg 13978824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 11560610 - 11560578
Alignment:
Q  29 aaagcaatgaacacaaataatcttgaataaaga 61  Q
    ||||||||||||||||||||| |||||||||||    
T  11560610 aaagcaatgaacacaaataattttgaataaaga 11560578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0273 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 20018 - 20144
Alignment:
Q  40 cacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttca-aacaaattacatggttcatagatcacaatagattcatctcatga 138  Q
    ||||||||||  ||||||||||||||| || ||||||  | |||  ||||||||  |||||||||||||||||| ||||||||| ||||||||||||||     
T  20018 cacaaataattctgaataaagactaggttttcattgatgtcaaa--gagagttcttaacaaattacatggttcacagatcacaa-agattcatctcatgg 20114  T
Q  139 ctctgattaatctaagagcttaactactcat 169  Q
    || | || |||||||||| ||| ||||||||    
T  20115 ct-taatcaatctaagagtttagctactcat 20144  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 137
Target Start/End: Complemental strand, 5827823 - 5827717
Alignment:
Q  29 aaagcaatgaacacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttc-aaacaaattacatggttcatagatcacaatagat 127  Q
    |||||||||||||||||||||  ||||||||||||||| || | ||||  |  |||||||| |||  |||||| ||||||||||| ||||||||| ||||    
T  5827823 aaagcaatgaacacaaataattctgaataaagactaggttttctttga--tgtaaaagagaattcttaacaaactacatggttcacagatcacaa-agat 5827727  T
Q  128 tcatctcatg 137  Q
    ||||||||||    
T  5827726 tcatctcatg 5827717  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 131
Target Start/End: Complemental strand, 14627229 - 14627143
Alignment:
Q  43 aaataatcttgaataaagactaggattccattgaattaaaaaagagagttcaaacaaattacatggttcatagatcacaatagattcat 131  Q
    |||||||  ||||||| ||||||| ||||| |||  ||  |||| ||||||||||||||||||||||||| |||| |||||||||||||    
T  14627229 aaataattatgaataatgactaggtttccaatga--tatcaaagggagttcaaacaaattacatggttcacagattacaatagattcat 14627143  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 169
Target Start/End: Original strand, 3541490 - 3541625
Alignment:
Q  29 aaagcaatgaacacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttcaaacaaattacatggttcatagatcacaatagatt 128  Q
    |||||||||||||||||||||  ||||| ||||||||| || ||||||  | |||  ||||||||   |||||||||||||  | ||||||||| |||||    
T  3541490 aaagcaatgaacacaaataattctgaatgaagactaggttttcattgatgttaaa--gagagttctt-caaattacatggtcaacagatcacaa-agatt 3541585  T
Q  129 catctcatgactctgattaatctaagagcttaactactcat 169  Q
    |||||||||||| | || |||||||||| ||| ||||||||    
T  3541586 catctcatgact-taatcaatctaagagtttagctactcat 3541625  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 44018166 - 44018220
Alignment:
Q  83 aaagagagttca-aacaaattacatggttcatagatcacaatagattcatctcatg 137  Q
    |||||||||||  |||||||||||||||||| ||||||||| ||||||||||||||    
T  44018166 aaagagagttcttaacaaattacatggttcacagatcacaa-agattcatctcatg 44018220  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 17601432 - 17601382
Alignment:
Q  87 agagttcaaacaaattacatggttcatagatcacaatagattcatctcatg 137  Q
    ||||||||||||| |||||| ||||| | || |||||||||||||||||||    
T  17601432 agagttcaaacaagttacattgttcacatattacaatagattcatctcatg 17601382  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 22083722 - 22083752
Alignment:
Q  1 tgcaagaagttagggttaatagtcatgcaaa 31  Q
    |||||||||||||||||||||||||||||||    
T  22083722 tgcaagaagttagggttaatagtcatgcaaa 22083752  T

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Target: scaffold0911 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0911
Description:

Target: scaffold0911; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 137
Target Start/End: Complemental strand, 4350 - 4255
Alignment:
Q  40 cacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttca-aacaaattacatggttcatagatcacaatagattcatctcatg 137  Q
    ||||||||||  ||||||||||||||| || ||||||  | |||  ||||||||  |||||||||||||||||| ||||||||| ||||||||||||||    
T  4350 cacaaataattctgaataaagactaggttttcattgatgtcaaa--gagagttcttaacaaattacatggttcacagatcacaa-agattcatctcatg 4255  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 137
Target Start/End: Original strand, 40678105 - 40678200
Alignment:
Q  40 cacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttca-aacaaattacatggttcatagatcacaatagattcatctcatg 137  Q
    ||||||||||  ||||||||||||||| || ||||||  | |||  ||||||||  |||||||||||||||||| ||||||||| ||||||||||||||    
T  40678105 cacaaataattctgaataaagactaggttttcattgatgtcaaa--gagagttcttaacaaattacatggttcacagatcacaa-agattcatctcatg 40678200  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 30719613 - 30719583
Alignment:
Q  1 tgcaagaagttagggttaatagtcatgcaaa 31  Q
    |||||||||||||||||||||||||||||||    
T  30719613 tgcaagaagttagggttaatagtcatgcaaa 30719583  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 137
Target Start/End: Original strand, 23441617 - 23441712
Alignment:
Q  40 cacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttca-aacaaattacatggttcatagatcacaatagattcatctcatg 137  Q
    ||||||||||  ||||||||||||||| || ||||||| | ||||||||  |||  |||||||||||||||||| ||||||||| |||||||| |||||    
T  23441617 cacaaataattctgaataaagactaggttttcattgaagtcaaaaagag--ttcttaacaaattacatggttcacagatcacaa-agattcatatcatg 23441712  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 137
Target Start/End: Complemental strand, 33898111 - 33898016
Alignment:
Q  40 cacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttca-aacaaattacatggttcatagatcacaatagattcatctcatg 137  Q
    ||||||||||  ||||||||||||||| || ||||||  | |||  ||||||||  |||||||||||||||||| ||||||||| ||||||||||||||    
T  33898111 cacaaataattctgaataaagactaggttttcattgatgtcaaa--gagagttcttaacaaattacatggttcacagatcacaa-agattcatctcatg 33898016  T

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