View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1300_high_7 (Length: 391)
Name: NF1300_high_7
Description: NF1300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1300_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 37871840 - 37871462
Alignment:
| Q |
1 |
ctgtggcaatacttgctcagtttgagcatcagattcatccttttcactatcactaacagtcatatccacaacgcattcaacgccctgctttgagttggtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37871840 |
ctgtggcaatacttgctcagtttgagcatcagattcatccttttcactatcactaacagtcatatccacaacgcattcaacgccctgctttgagttggtg |
37871741 |
T |
|
| Q |
101 |
gatttaactttaacaaccccgcttctaatgcgttcagaacgcctcacagatccattacggtatttggacannnnnnnagccaatgtagcatacttctttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37871740 |
gatttaactttaacaaccccgcttctaatgcgttcagaacgcctcacagatccattacggtatttggacatttttttagccaatgtagcatacttctttt |
37871641 |
T |
|
| Q |
201 |
gatgtttacttaccggagtggtttgttcttgtggttcttttcctacagcacttgtttccactccagctactgacaaattcagatgctttttcagtgggga |
300 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37871640 |
gatgtttacttaccagagtggtttgttcttgtggttcttttcctacagcacctgtttccactccagctactgacgaattcagatgctttttcagtgggga |
37871541 |
T |
|
| Q |
301 |
agacatagggtgtggatttcccagctcagattctaacacttccattggatttatgttttcattggaagcttgttgttca |
379 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37871540 |
agacatagggtgtggatttcccagctcagattctaacacctccattggatttatgttttcattggaagcttgttgttca |
37871462 |
T |
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