View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1300_low_10 (Length: 408)
Name: NF1300_low_10
Description: NF1300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1300_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 12 - 398
Target Start/End: Original strand, 43817910 - 43818296
Alignment:
| Q |
12 |
aatgaaaactaagatatgattatttggattcaataaagggattgttacttcgttttggtttcatcaacatgatannnnnnngggtttgatctaccttaaa |
111 |
Q |
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| T |
43817910 |
aatgaaaactaagatatgattatttggattcaataaagggattgttacttcgttttggtttcatcaacatgatatttttttgggtttgatctaccttaaa |
43818009 |
T |
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| Q |
112 |
ggtagattgggagagacggttaccaaaccctcaggtgaataattttcttcgttaattttataacataaataatatctttttagattcttcttatttgcag |
211 |
Q |
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| T |
43818010 |
ggtagattgggagagacggttaccaaaccctcaggtgaataattttcttcgctaattttataacataaataatatctttttagattcttcttatttgcag |
43818109 |
T |
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| Q |
212 |
ttagataagagagaaaaacgatcattagagaatatgattattaatggtggaattaatgaactggcttagattttattttattccttatttgggttaccgg |
311 |
Q |
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| T |
43818110 |
ttagataagagagaaaaacgatcattagagaatatgattattaatggtggaattaatgaactggcttagattttattttattccttatttgggttaccgg |
43818209 |
T |
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| Q |
312 |
tataaagtagttactatgttttctttcatgtttaacacatttatttggggacaatactactttggaccatttcgttgttggcctatg |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43818210 |
tataaagtagttactatgttttctttcatgtttaacacatttatttggggacaatactactttggaccatttcgttgttggtctatg |
43818296 |
T |
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