View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1300_low_13 (Length: 385)
Name: NF1300_low_13
Description: NF1300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1300_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 53 - 381
Target Start/End: Complemental strand, 37256949 - 37256628
Alignment:
| Q |
53 |
tctatggatcaaagcatccccctgtagtctaacgtacttcatatatgtatttatcagaaaatcccaaactcgatcagcaggtagaaacaaatacatcagt |
152 |
Q |
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| T |
37256949 |
tctatggatcaaagcatccccctctagtctaacgtacttcatatatgtatttatcagaaaatcccaaactcgatcagcaggtagaaacaaatacatcagt |
37256850 |
T |
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| Q |
153 |
aacttataaactaaataattgaaattcatagaaaatccccaatttgatagggttaggtttccatcaattaaagcattcaaataaattgtaattcttttca |
252 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37256849 |
aactcataaactaaataattgaaattcata-aaaatccccaatttgatagggttaggttttcatcaattaaagcattcaaataaattgtaattcttttca |
37256751 |
T |
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| Q |
253 |
aaatcacaacatacataccatggaagggttaaaggagtgtgattactcacctgttaaaatctagaatgaattgaaactaacggctgattttctcgtcact |
352 |
Q |
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| T |
37256750 |
aaa----atca-gtataccatggaagggttaaagg-gtgtgattactcacctgttaaaatctagaatgaattgaaactaacggctgattttctcgtcact |
37256657 |
T |
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| Q |
353 |
caccaaagcatattttccctttgtttctc |
381 |
Q |
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| T |
37256656 |
gaccaaagcatatttttcttttgtttctc |
37256628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 160 - 310
Target Start/End: Complemental strand, 1681309 - 1681168
Alignment:
| Q |
160 |
aaactaaataattgaaattcatagaaaatccccaatttgatagggttaggtttccatcaattaaagcattcaaataaattgtaattcttttcaaaatcac |
259 |
Q |
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| T |
1681309 |
aaactaaataattgaaattcata--aaatttgcaattttatagtgttaggttttcatcaaataaatcattcaaataaattgtaattcttttcaaaatca- |
1681213 |
T |
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| Q |
260 |
aacatacataccatggaagggttaaaggagtgtgattactcacctgttaaa |
310 |
Q |
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| T |
1681212 |
-----atataccatggaagagttaaatg-gtgtgattactcaccttttaaa |
1681168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 182
Target Start/End: Complemental strand, 25879055 - 25878915
Alignment:
| Q |
39 |
taatccaattataatctatggatcaaagcatccccctgtagtctaacgtacttcatatatgtatttatcagaaaatcccaaactcgatcagcaggtagaa |
138 |
Q |
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| T |
25879055 |
taatcaaattctaatctaaggatcaaagcatccacatatagactaacatgcactatatatgtatgtataagaaaatcccagaatccatcagtaggt-gaa |
25878957 |
T |
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| Q |
139 |
acaaatacatcagtaacttataaactaaataattgaaattcata |
182 |
Q |
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| T |
25878956 |
a--aatacagcagtagcttagaaactaaataattgaaattcata |
25878915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 304
Target Start/End: Complemental strand, 24544197 - 24544127
Alignment:
| Q |
229 |
tcaaataaattgtaattcttttcaaaatcacaacatacataccatggaagggttaaaggagtgtgattactcacct |
304 |
Q |
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||||||||||| ||| ||||| ||||||| ||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
24544197 |
tcaaataaattataactctttcaaaaatca----atatataccatggaagggttaaagg-gtgtgattactcacct |
24544127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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