View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1300_low_2 (Length: 543)
Name: NF1300_low_2
Description: NF1300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1300_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 498; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 30 - 535
Target Start/End: Original strand, 42086547 - 42087052
Alignment:
| Q |
30 |
taaagtaggtggaataaaccctaaagtttgtaaagaatggcttgatacaaaaccttcaaattcggtgttatttgtttgttttggatcgatgaacacaatt |
129 |
Q |
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| T |
42086547 |
taaagtaggtggaataaaccctaaagtttgtaaagaatggcttgatacaaaaccttcaaattcggtgttatttgtttgttttggatcgatgaacacaatt |
42086646 |
T |
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| Q |
130 |
tctgctacacagatgatgcaacttggaacggcgttggaaaaaagtggaaagaatttcatctgggtagtgaggccaccaataggttttgatataaactcag |
229 |
Q |
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| T |
42086647 |
tctgctacacagatgatgcaacttggaacggcgttggaaaaaagtggaaagaatttcatctgggtagtgaggccaccaataggttttgatataaactcag |
42086746 |
T |
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| Q |
230 |
agtttaaatatgaagagtggttaccattagggtttatggagaagattgtggaaacaaagagaggtataatagtaaatgattgggcaccacaagttgagat |
329 |
Q |
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| T |
42086747 |
agtttaaatatgaagagtggttaccattagggtttatggagaagattgtggaaacaaagagaggtataatagtaaatgattgggcaccacaagttgagat |
42086846 |
T |
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| Q |
330 |
attatcacatggatcagtttctgcgtttttgagtcattgtggttggaactcagtgttggaatcattgagtcatggtgtacctattcttgggtggccgatg |
429 |
Q |
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| T |
42086847 |
attgtcacatggatcagtttctgcgtttttgagtcattgtggttggaactcggtgttggaatcattgagtcatggtgtacctattcttgggtggccgatg |
42086946 |
T |
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| Q |
430 |
gcggcggagcagttttttaattgtaagctgttggaagaagagatgggtgtttgtgttgaggttgctagaggaaagagttgtgaagtgaagtatgaagata |
529 |
Q |
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| T |
42086947 |
gcggcggagcagttttttaattgtaagctgttggaagaagagatgggtgtttgtgttgaggttgctagaggaaagagttgtgaagtgaagtatgaagata |
42087046 |
T |
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| Q |
530 |
ttgttg |
535 |
Q |
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| T |
42087047 |
ttgttg |
42087052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 392
Target Start/End: Complemental strand, 24462298 - 24462261
Alignment:
| Q |
355 |
tttttgagtcattgtggttggaactcagtgttggaatc |
392 |
Q |
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| T |
24462298 |
tttttgactcattgtggatggaactcagtgttggaatc |
24462261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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