View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1300_low_23 (Length: 286)
Name: NF1300_low_23
Description: NF1300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1300_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 66 - 239
Target Start/End: Complemental strand, 227532 - 227364
Alignment:
| Q |
66 |
catcttaggtacaaaatttatatatcatgtcatacaagatgaattttattttaattatggtgcatagatatatttacatttctttttaggtggtaaaatg |
165 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
227532 |
catcttaggtacaaaatttatatatcatgtcatacaagatca-----attttaattatggtgcataaatatatttacatttctttttaggtggtaaaatg |
227438 |
T |
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| Q |
166 |
catttgatatgcggaattgtccaatatgctttgcttactggagctgcaattggatacacaattacaacatctgt |
239 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
227437 |
catttgatatgcggaattgtccaatatgctttgcttagtggagctgcaattggatacacaattacaacatctgt |
227364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 66 - 239
Target Start/End: Original strand, 256771 - 256940
Alignment:
| Q |
66 |
catcttaggtacaaaatttatatatcatgtcatacaagatgaattttattttaattatggtgcatagatatatttacatttcttttt-aggtggtaaaat |
164 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
256771 |
catcttaggtacaaaatttatatatcatgtcatacaagatca-----attttaattatggtgcataaatatatttacatttctttttaaggtggtaaaat |
256865 |
T |
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| Q |
165 |
gcatttgatatgcggaattgtccaatatgctttgcttactggagctgcaattggatacacaattacaacatctgt |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
256866 |
gcatttgatatgcggaattgtccaatatgctttgcttagtggagctgcaattggatacacaattacaacatctgt |
256940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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