View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1300_low_24 (Length: 280)

Name: NF1300_low_24
Description: NF1300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1300_low_24
NF1300_low_24
[»] chr1 (5 HSPs)
chr1 (34-102)||(6804458-6804526)
chr1 (178-259)||(14994255-14994336)
chr1 (175-263)||(13140372-13140460)
chr1 (175-263)||(24559072-24559160)
chr1 (49-111)||(51897615-51897678)
[»] chr3 (4 HSPs)
chr3 (30-111)||(39680968-39681050)
chr3 (49-111)||(51383995-51384057)
chr3 (180-265)||(10802099-10802184)
chr3 (159-220)||(15078322-15078383)
[»] chr6 (1 HSPs)
chr6 (160-259)||(16474252-16474351)
[»] chr4 (3 HSPs)
chr4 (30-96)||(41475690-41475757)
chr4 (30-111)||(44059586-44059668)
chr4 (189-270)||(22283737-22283818)
[»] chr2 (1 HSPs)
chr2 (158-234)||(18347332-18347408)
[»] chr8 (5 HSPs)
chr8 (147-270)||(22226164-22226287)
chr8 (147-270)||(22232506-22232629)
chr8 (189-265)||(16243941-16244017)
chr8 (177-259)||(19272760-19272842)
chr8 (194-247)||(23112494-23112547)
[»] chr7 (1 HSPs)
chr7 (164-270)||(15983050-15983156)
[»] scaffold0011 (1 HSPs)
scaffold0011 (177-259)||(47761-47843)


Alignment Details
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 6804458 - 6804526
Alignment:
Q  34 ttaattacaagaataccctcccttgtattgtggcaggagcaaaattatatgttgtaaacgtgtcgtgat 102  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6804458 ttaattacaagaatgccctcctttgtattgtggcaggagcaaaattatatgttgtaaacgtgtcgtgat 6804526  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 259
Target Start/End: Complemental strand, 14994336 - 14994255
Alignment:
Q  178 tcagagaaatggaaaaatggatcaagaacttcatatggagtggtgatatatctaaaaggaaattggttacagtggcttggaa 259  Q
    |||||||  |||||| |||||||||||||||||| |||||||| |||||| | || || ||| |||| || |||||||||||    
T  14994336 tcagagagttggaaagatggatcaagaacttcatttggagtggggatataaccaagagaaaaatggtgactgtggcttggaa 14994255  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 263
Target Start/End: Complemental strand, 13140460 - 13140372
Alignment:
Q  175 ttctcagagaaatggaaaaatggatcaagaacttcatatggagtggtgatatatctaaaaggaaattggttacagtggcttggaagaaa 263  Q
    |||| ||||| ||||| |||||||| || |||||||||||||||||||||||  | || |||||| |||| || || ||||||| ||||    
T  13140460 ttcttagagatatggagaaatggataaaaaacttcatatggagtggtgatatcacaaagaggaaaatggtgacggtagcttggaggaaa 13140372  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 263
Target Start/End: Complemental strand, 24559160 - 24559072
Alignment:
Q  175 ttctcagagaaatggaaaaatggatcaagaacttcatatggagtggtgatatatctaaaaggaaattggttacagtggcttggaagaaa 263  Q
    |||| ||||| ||||| |||||||| || |||||||||||||||||||||||  | || |||||| |||| || || ||||||| ||||    
T  24559160 ttcttagagatatggagaaatggataaaaaacttcatatggagtggtgatatcacaaagaggaaaatggtgacggtagcttggaggaaa 24559072  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 111
Target Start/End: Original strand, 51897615 - 51897678
Alignment:
Q  49 ccctcccttgtattgtggcaggagcaaaattatat-gttgtaaacgtgtcgtgattccgtcggg 111  Q
    |||||||||| ||||||| |||||||||||||||| ||||||||   |||||||| ||||||||    
T  51897615 ccctcccttgaattgtggaaggagcaaaattatatggttgtaaattagtcgtgatcccgtcggg 51897678  T

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Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 39681050 - 39680968
Alignment:
Q  30 tttcttaattacaagaataccctcccttgtattgtggcaggagcaaaattatat-gttgtaaacgtgtcgtgattccgtcggg 111  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||| ||| |||||||||||||    
T  39681050 tttcttaattacaaaaataccctcccttgtattgtggtaggagcaaaattatatggttgtaaacgagtcatgattccgtcggg 39680968  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 111
Target Start/End: Original strand, 51383995 - 51384057
Alignment:
Q  49 ccctcccttgtattgtggcaggagcaaaattatatgttgtaaacgtgtcgtgattccgtcggg 111  Q
    |||| |||||||||| ||| |||||||||||||||||||||||| ||| ||||| ||||||||    
T  51383995 cccttccttgtattgaggcgggagcaaaattatatgttgtaaacatgttgtgatcccgtcggg 51384057  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 265
Target Start/End: Original strand, 10802099 - 10802184
Alignment:
Q  180 agagaaatggaaaaatggatcaagaacttcatatggagtggtgatatatctaaaaggaaattggttacagtggcttggaagaaagt 265  Q
    |||||||| || |||||||| || |||||||| | |||||| || || |  |||| ||||||||| || |||||||||||||||||    
T  10802099 agagaaattgagaaatggataaataacttcatttagagtggcgacatctacaaaaagaaattggtgactgtggcttggaagaaagt 10802184  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 15078322 - 15078383
Alignment:
Q  159 tcttggccaacaagtcttctcagagaaatggaaaaatggatcaagaacttcatatggagtgg 220  Q
    |||||||||| |||  | ||||||||||| || |||||||||||||| || |||||||||||    
T  15078322 tcttggccaataagcttactcagagaaatagagaaatggatcaagaattttatatggagtgg 15078383  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 259
Target Start/End: Complemental strand, 16474351 - 16474252
Alignment:
Q  160 cttggccaacaagtcttctcagagaaatggaaaaatggatcaagaacttcatatggagtggtgatatatctaaaaggaaattggttacagtggcttggaa 259  Q
    ||||||||| |||||||||||||| ||| || ||||||||||| |||||||||||||| |||||| |   ||| || |||||||||||||| ||||||||    
T  16474351 cttggccaataagtcttctcagagcaatagagaaatggatcaaaaacttcatatggagcggtgatcttagtaagagaaaattggttacagtagcttggaa 16474252  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 41475757 - 41475690
Alignment:
Q  30 tttcttaattacaagaataccctcccttgtattgtggcaggagcaaaattata-tgttgtaaacgtgt 96  Q
    ||||||||||| |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  41475757 tttcttaattataagaatgccctcccttgtattgtggcatgagcaaaattatactgttgtaaacgtgt 41475690  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 44059668 - 44059586
Alignment:
Q  30 tttcttaattacaagaataccctcccttgtattgtggcaggagcaaaattatatg-ttgtaaacgtgtcgtgattccgtcggg 111  Q
    |||||||||| |||||||  | |||||||| ||| | |||||||||||||||||| |||||||||||||||||||||||||||    
T  44059668 tttcttaattgcaagaatgtcatcccttgttttgggacaggagcaaaattatatggttgtaaacgtgtcgtgattccgtcggg 44059586  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 270
Target Start/End: Complemental strand, 22283818 - 22283737
Alignment:
Q  189 gaaaaatggatcaagaacttcatatggagtggtgatatatctaaaaggaaattggttacagtggcttggaagaaagtctgtg 270  Q
    |||| |||||||||||||||||| |||||||  |||||| | || || ||| |||| || |||||||||||||| |||||||    
T  22283818 gaaagatggatcaagaacttcatttggagtgaggatataaccaagagaaaaatggtgactgtggcttggaagaaggtctgtg 22283737  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 234
Target Start/End: Original strand, 18347332 - 18347408
Alignment:
Q  158 ttcttggccaacaagtcttctcagagaaatggaaaaatggatcaagaacttcatatggagtggtgatatatctaaaa 234  Q
    ||||||||||||||  ||||| ||| |||||||||||||||||||||| ||||| |||||| ||||| |||||||||    
T  18347332 ttcttggccaacaaaacttcttagacaaatggaaaaatggatcaagaatttcatctggagtagtgatgtatctaaaa 18347408  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 270
Target Start/End: Complemental strand, 22226287 - 22226164
Alignment:
Q  147 atgtctgtcttttcttggccaacaagtcttctcagagaaatggaaaaatggatcaagaacttcatatggagtggtgatatatctaaaaggaaattggtta 246  Q
    ||||||||||| ||||||||||| |  ||||| || || ||||| ||||||||||| ||| |  |||||||||| ||||||  || ||||||| ||||||    
T  22226287 atgtctgtcttctcttggccaactaaccttcttagtgatatggagaaatggatcaaaaaccttctatggagtggggatataaatagaaggaaaatggtta 22226188  T
Q  247 cagtggcttggaagaaagtctgtg 270  Q
    |||| || ||||||||||| ||||    
T  22226187 cagtagcatggaagaaagtttgtg 22226164  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 270
Target Start/End: Complemental strand, 22232629 - 22232506
Alignment:
Q  147 atgtctgtcttttcttggccaacaagtcttctcagagaaatggaaaaatggatcaagaacttcatatggagtggtgatatatctaaaaggaaattggtta 246  Q
    ||||||||||| ||||||||||| |  ||||| || || ||||| ||||||||||| ||| |  |||||||||| ||||||  || ||||||| ||||||    
T  22232629 atgtctgtcttctcttggccaactaaccttcttagtgatatggagaaatggatcaaaaaccttctatggagtggggatataaatagaaggaaaatggtta 22232530  T
Q  247 cagtggcttggaagaaagtctgtg 270  Q
    |||| || ||||||||||| ||||    
T  22232529 cagtagcatggaagaaagtttgtg 22232506  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 265
Target Start/End: Original strand, 16243941 - 16244017
Alignment:
Q  189 gaaaaatggatcaagaacttcatatggagtggtgatatatctaaaaggaaattggttacagtggcttggaagaaagt 265  Q
    ||||||||||| || ||||| || |||||||||||| | ||||||||||| ||| ||||||| |||||| |||||||    
T  16243941 gaaaaatggattaaaaactttatttggagtggtgatgtctctaaaaggaagttgattacagttgcttgggagaaagt 16244017  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 259
Target Start/End: Original strand, 19272760 - 19272842
Alignment:
Q  177 ctcagagaaatggaaaaatggatcaagaacttcatatggagtggtgatatatctaaaaggaaattggttacagtggcttggaa 259  Q
    ||||||||||| ||||||||||| || ||||||||||||||||| || ||  | || |||||| |||| ||||| ||||||||    
T  19272760 ctcagagaaatagaaaaatggataaaaaacttcatatggagtggagacatcacaaagaggaaaatggtaacagttgcttggaa 19272842  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 247
Target Start/End: Original strand, 23112494 - 23112547
Alignment:
Q  194 atggatcaagaacttcatatggagtggtgatatatctaaaaggaaattggttac 247  Q
    |||||| ||||||||||| ||||||||||| ||| |||||| ||| ||||||||    
T  23112494 atggattaagaacttcatttggagtggtgacataactaaaaagaagttggttac 23112547  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 270
Target Start/End: Complemental strand, 15983156 - 15983050
Alignment:
Q  164 gccaacaagtcttctcagagaaatggaaaaatggatcaagaacttcatatggagtggtgatatatctaaaaggaaattggttacagtggcttggaagaaa 263  Q
    |||||||||||||||||| ||||| ||||||||||||||||| || || |||||||| || |||   |||||||| || || ||  | ||||||||||||    
T  15983156 gccaacaagtcttctcagggaaattgaaaaatggatcaagaattttatttggagtggggacataaacaaaaggaagttagtgactatagcttggaagaaa 15983057  T
Q  264 gtctgtg 270  Q
    || ||||    
T  15983056 gtttgtg 15983050  T

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Target: scaffold0011 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 259
Target Start/End: Complemental strand, 47843 - 47761
Alignment:
Q  177 ctcagagaaatggaaaaatggatcaagaacttcatatggagtggtgatatatctaaaaggaaattggttacagtggcttggaa 259  Q
    ||||||||||| ||||||||||| || || |||||||||||||| |||||  | || |||||| | |||||||| ||||||||    
T  47843 ctcagagaaatagaaaaatggataaaaaaattcatatggagtggagatatcacaaagaggaaaattgttacagttgcttggaa 47761  T

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