View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1300_low_25 (Length: 274)
Name: NF1300_low_25
Description: NF1300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1300_low_25 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 7446740 - 7446833
Alignment:
| Q |
16 |
atgaacgttcgttcatatgagctctgggctcgatgatatccaaaccgtacattattaagttttcacttctcagccacacgatatttcatctcac |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
7446740 |
atgaacgttcgttcatatgagctctgggctcgatgaaatccaaaccgtacattattaagttttcactactcagccacacgatatttcatgtcac |
7446833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 274
Target Start/End: Complemental strand, 29537833 - 29537743
Alignment:
| Q |
184 |
ttcttatcagctggcatctcccacaatcccacttttcttcggactgcgtcttcatcctcacaccaagcatccttaccatcactgacattcc |
274 |
Q |
| |
|
||||||| ||||||| ||||| |||| || ||||||||||||||| |||||||||| || ||||||| || ||| ||| ||||||||||| |
|
|
| T |
29537833 |
ttcttataagctggcttctccaacaagccaacttttcttcggactccgtcttcatcagcaaaccaagcttcattaacattactgacattcc |
29537743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 274
Target Start/End: Complemental strand, 29552947 - 29552873
Alignment:
| Q |
200 |
tctcccacaatcccacttttcttcggactgcgtcttcatcctcacaccaagcatccttaccatcactgacattcc |
274 |
Q |
| |
|
||||| |||| || ||||||||||||||| |||||||||| || ||||||| || ||| ||| ||||||||||| |
|
|
| T |
29552947 |
tctccaacaaaccaacttttcttcggactccgtcttcatcagcaaaccaagcttcattaacattactgacattcc |
29552873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 274
Target Start/End: Complemental strand, 42188814 - 42188734
Alignment:
| Q |
194 |
ctggcatctcccacaatcccacttttcttcggactgcgtcttcatcctcacaccaagcatccttaccatcactgacattcc |
274 |
Q |
| |
|
||||| ||||| |||| || ||||||||||||||| |||||| || || |||||||||| ||| ||| ||||||||||| |
|
|
| T |
42188814 |
ctggcttctccaacaagccaacttttcttcggactctgtcttcgtcagcaaaccaagcatcattaacattactgacattcc |
42188734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University