View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1300_low_26 (Length: 267)
Name: NF1300_low_26
Description: NF1300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1300_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 28 - 239
Target Start/End: Complemental strand, 20162729 - 20162518
Alignment:
| Q |
28 |
acagatatcaaagtcagaaggttcttccgaccggaagatgtatcaagtgagaaggcatactgttctgatgtgcaagaggtaaaaagttacatacaagtta |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20162729 |
acagatatcaaagtcagaaggttcttccgaccggaagatgtatcaagtgagaaggcatactgttctgatgtgcaagaggtaaaaagttacatacaagtta |
20162630 |
T |
|
| Q |
128 |
ttataacttaatgannnnnnnnnnnnnggtaccaagtcattcataccttttctaaattgattttgacaagtgacctgatctttgtgtgttcatattgttg |
227 |
Q |
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|||||||| ||||| ||||| ||||||||||||| | ||| |||||| ||||| ||||||||||| ||||||||||||||||||||| |
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| T |
20162629 |
ttataactaaatgatttttcattttttggtactaagtcattcatacttgttcagaattgactttgataagtgacctgacctttgtgtgttcatattgttg |
20162530 |
T |
|
| Q |
228 |
tttattgtctct |
239 |
Q |
| |
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|| ||||||||| |
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|
| T |
20162529 |
ttaattgtctct |
20162518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 8e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 28 - 239
Target Start/End: Original strand, 12039680 - 12039891
Alignment:
| Q |
28 |
acagatatcaaagtcagaaggttcttccgaccggaagatgtatcaagtgagaaggcatactgttctgatgtgcaagaggtaaaaagttacatacaagtta |
127 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12039680 |
acagatatcaaagtcagaaggttcttccgaccggaagatgtatcaagtgagaaggcatactgttctgatgtgcaagaggtaaaaggttacatacaagtta |
12039779 |
T |
|
| Q |
128 |
ttataacttaatgannnnnnnnnnnnnggtaccaagtcattcataccttttctaaattgattttgacaagtgacctgatctttgtgtgttcatattgttg |
227 |
Q |
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| T |
12039780 |
ttataactaaatgatttttcattttttggtactaagtcattcatacttgttcagaattgactttgataagtgacctgacctttgtgtgttcatattgttg |
12039879 |
T |
|
| Q |
228 |
tttattgtctct |
239 |
Q |
| |
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|| ||||||||| |
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| T |
12039880 |
ttcattgtctct |
12039891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 28 - 239
Target Start/End: Complemental strand, 24279474 - 24279263
Alignment:
| Q |
28 |
acagatatcaaagtcagaaggttcttccgaccggaagatgtatcaagtgagaaggcatactgttctgatgtgcaagaggtaaaaagttacatacaagtta |
127 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24279474 |
acagatatcaaagtaagaaggttcttccgaccggaagatgtatcaagtgagaaggcatactgttctgatgtgcaagaggtaaaaagttacatacaagtta |
24279375 |
T |
|
| Q |
128 |
ttataacttaatgannnnnnnnnnnnnggtaccaagtcattcataccttttctaaattgattttgacaagtgacctgatctttgtgtgttcatattgttg |
227 |
Q |
| |
|
||||||||| |||| ||||| |||||||| |||| | |||| |||||| ||||| |||||||||||||||| ||||||||| |||||| |
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| T |
24279374 |
ttataacttcatgatttttctttttttggtactaagtcatttatacttgttctgaattgactttgataagtgacctgatctttatgtgttcattttgttg |
24279275 |
T |
|
| Q |
228 |
tttattgtctct |
239 |
Q |
| |
|
|| ||||||||| |
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|
| T |
24279274 |
ttcattgtctct |
24279263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 34 - 239
Target Start/End: Complemental strand, 8052243 - 8052037
Alignment:
| Q |
34 |
atcaaagtcagaaggttcttccgaccggaagatgtatcaagtgagaaggcatactgttctgatgtgcaagaggtaaaaagttac--atacaagttattat |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||| |||||||||||||| |
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| T |
8052243 |
atcaaagtcagaaggttcttccgaccggaagatgtatcaagtgagaaggcatattgttctgatgtacacgaggtaaaaagttacatatacaagttattat |
8052144 |
T |
|
| Q |
132 |
aacttaatgannnnnnnnnnnnnggtaccaagtcattcataccttttctaaattgattttgacaagtgacctgatctttgtgtgttcatattgttgttta |
231 |
Q |
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|||||||||| ||||| ||||||||||||| | |||| |||||| ||||| ||||||||||||||||||| ||||||||||||||| | |
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| T |
8052143 |
aacttaatga-ttttttatttttggtactaagtcattcatacttgttctgaattgactttgataagtgacctgatctttgtgcgttcatattgttgttca |
8052045 |
T |
|
| Q |
232 |
ttgtctct |
239 |
Q |
| |
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|||||||| |
|
|
| T |
8052044 |
ttgtctct |
8052037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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