View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1300_low_27 (Length: 262)
Name: NF1300_low_27
Description: NF1300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1300_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 114; Significance: 7e-58; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 56 - 234
Target Start/End: Complemental strand, 1685330 - 1685152
Alignment:
| Q |
56 |
gtgatttcatcaaactcatagtgattttaataaagataaacttcaaaaacatacacttacgctattagttttcaaagcttcaataaaataacaatgttaa |
155 |
Q |
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| T |
1685330 |
gtgatttcatcaaactcatcctgatttttttaaagataaacttcaaaaacatacacttacactattagtcttaaaagcttcaataaaataacgatgttaa |
1685231 |
T |
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| Q |
156 |
ctattgannnnnnnggcacttcaactttctataacattctactaatgaattatttgaatgaattgcatcccaactttct |
234 |
Q |
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| T |
1685230 |
ctattgatttttttggctcttcaactttctataacatactactaatgaattatttgaatgaattgcagcccaactttct |
1685152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 97 - 234
Target Start/End: Complemental strand, 1695821 - 1695684
Alignment:
| Q |
97 |
ttcaaaaacatacacttacgctattagttttcaaagcttcaataaaataacaatgttaactattgannnnnnnggcacttcaactttctataacattcta |
196 |
Q |
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| T |
1695821 |
ttcaataacatacacttacactattagttttcaaagcttcaataaaataacaatgttaactattgatttttttggcacttcaactttctttaacattcta |
1695722 |
T |
|
| Q |
197 |
ctaatgaattatttgaatgaattgcatcccaactttct |
234 |
Q |
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| T |
1695721 |
ctaatgaattatttgaatgaattgcagcccaactttct |
1695684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 1685285 - 1685234
Alignment:
| Q |
1 |
aaaacatacacttacactattagt-ttgaaagcttcaatgaaacaacgatgt |
51 |
Q |
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| T |
1685285 |
aaaacatacacttacactattagtcttaaaagcttcaataaaataacgatgt |
1685234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 1971671 - 1971632
Alignment:
| Q |
195 |
tactaatgaattatttgaatgaattgcatcccaactttct |
234 |
Q |
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| T |
1971671 |
tactaatgaattatttgaatgaattgcaatccaactttct |
1971632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 85
Target Start/End: Complemental strand, 31464782 - 31464753
Alignment:
| Q |
56 |
gtgatttcatcaaactcatagtgattttaa |
85 |
Q |
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| T |
31464782 |
gtgatttcatcaaactcatagtgattttaa |
31464753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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