View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1300_low_3 (Length: 499)

Name: NF1300_low_3
Description: NF1300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1300_low_3
NF1300_low_3
[»] chr5 (14 HSPs)
chr5 (60-388)||(40864775-40865103)
chr5 (388-488)||(40864650-40864750)
chr5 (429-488)||(9202831-9202890)
chr5 (1-35)||(40865128-40865162)
chr5 (429-466)||(14932240-14932277)
chr5 (432-479)||(1465105-1465152)
chr5 (429-475)||(11615449-11615495)
chr5 (429-467)||(35446004-35446042)
chr5 (429-467)||(42500308-42500346)
chr5 (429-478)||(465892-465941)
chr5 (429-478)||(7674586-7674635)
chr5 (431-483)||(19460055-19460107)
chr5 (439-483)||(28409466-28409510)
chr5 (436-488)||(28776903-28776955)
[»] chr4 (11 HSPs)
chr4 (411-477)||(50662797-50662863)
chr4 (413-467)||(39438604-39438657)
chr4 (429-480)||(437515-437567)
chr4 (429-472)||(3155547-3155590)
chr4 (429-467)||(41336710-41336747)
chr4 (429-467)||(43505905-43505943)
chr4 (430-480)||(44138495-44138545)
chr4 (429-467)||(50681172-50681210)
chr4 (429-467)||(51630060-51630098)
chr4 (432-465)||(13216290-13216323)
chr4 (430-467)||(25904294-25904331)
[»] chr1 (11 HSPs)
chr1 (388-479)||(36070187-36070284)
chr1 (431-472)||(46252767-46252808)
chr1 (428-483)||(289173-289228)
chr1 (429-467)||(47432045-47432083)
chr1 (430-467)||(9572192-9572229)
chr1 (429-466)||(24915134-24915171)
chr1 (429-466)||(41184733-41184770)
chr1 (431-479)||(3887717-3887765)
chr1 (433-473)||(29904702-29904742)
chr1 (402-471)||(42174802-42174875)
chr1 (429-477)||(45145165-45145213)
[»] chr2 (9 HSPs)
chr2 (431-488)||(4026745-4026802)
chr2 (429-488)||(36114347-36114406)
chr2 (411-477)||(5998765-5998833)
chr2 (429-488)||(3611154-3611213)
chr2 (429-472)||(42420377-42420420)
chr2 (433-483)||(18962125-18962175)
chr2 (433-483)||(28902010-28902060)
chr2 (438-483)||(34054993-34055038)
chr2 (431-483)||(31461371-31461423)
[»] chr6 (4 HSPs)
chr6 (432-488)||(264299-264355)
chr6 (429-480)||(29274312-29274363)
chr6 (429-467)||(8147651-8147689)
chr6 (430-483)||(4248891-4248944)
[»] chr7 (9 HSPs)
chr7 (427-466)||(45004716-45004755)
chr7 (429-479)||(35536044-35536094)
chr7 (429-467)||(45806409-45806447)
chr7 (429-465)||(20258463-20258499)
chr7 (429-465)||(20269527-20269563)
chr7 (429-477)||(28613617-28613665)
chr7 (429-465)||(34083608-34083644)
chr7 (431-467)||(40689071-40689107)
chr7 (440-488)||(47510039-47510087)
[»] scaffold0024 (1 HSPs)
scaffold0024 (429-478)||(21361-21410)
[»] chr3 (6 HSPs)
chr3 (429-488)||(35127454-35127513)
chr3 (429-467)||(30956709-30956747)
chr3 (429-467)||(30972521-30972559)
chr3 (434-483)||(31364834-31364883)
chr3 (429-474)||(46778310-46778355)
chr3 (429-477)||(2128334-2128382)
[»] chr8 (6 HSPs)
chr8 (429-483)||(1112786-1112840)
chr8 (431-477)||(2364558-2364604)
chr8 (440-489)||(10114417-10114466)
chr8 (430-479)||(21653018-21653067)
chr8 (429-478)||(41475143-41475192)
chr8 (431-483)||(41620376-41620428)


Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-178; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 60 - 388
Target Start/End: Complemental strand, 40865103 - 40864775
Alignment:
Q  60 tatcacagttagaatctcaattgaaagatattaatctcccaaaacaatacgcttcttctgcttctgctgcatcatccaatggttcttcttcaccataccc 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40865103 tatcacagttagaatctcaattgaaagatattaatctcccaaaacaacacgcttcttctgcttctgctgcatcatccaatggttcttcttcaccataccc 40865004  T
Q  160 cacaaatggattggaacctcacatgattcatagatacagtcgccaccttgttcttccttcctttggtgttcaaggtactacacattcatctaaattacac 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40865003 cacaaatggattggaacctcacatgattcatagatacagtcgccaccttgttcttccttcctttggtgttcaaggtactacacattcatctaaattacac 40864904  T
Q  260 tatcaaatattcaggggcaatttcatttttattgaaaatgttagatatagttggatattaatcagaattagtttgggggttgcttaatttaattaaactg 359  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40864903 tatcaaatattcaagggcaatttcatttttattgaaaatgttagatatagttggatattaatcagaattagtttgggggttgcttaatttaattaaactg 40864804  T
Q  360 gttttgagctaagggttagggttcaaata 388  Q
    ||||||||||||||||||| |||||||||    
T  40864803 gttttgagctaagggttagtgttcaaata 40864775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 388 - 488
Target Start/End: Complemental strand, 40864750 - 40864650
Alignment:
Q  388 agactgtttcagagaacttattgaaacaacttatagcttatacaatttaactttattttatcttatgctataaaaatagcctatatataagcacttttca 487  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40864750 agactgtttgagagaacttattgaaacaacttatagcttatacaatttaactttattttatcttatgctataaaaatagcctatatataagcacttttca 40864651  T
Q  488 t 488  Q
    |    
T  40864650 t 40864650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 429 - 488
Target Start/End: Original strand, 9202831 - 9202890
Alignment:
Q  429 acaatttaactttattttatcttatgctataaaaatagcctatatataagcacttttcat 488  Q
    ||||||||||||||||||||||| ||||| | ||||||| ||||||||||||||| ||||    
T  9202831 acaatttaactttattttatcttttgctacagaaatagcttatatataagcacttatcat 9202890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 40865162 - 40865128
Alignment:
Q  1 agagattcttcaagaacttgaatcactgaagagcg 35  Q
    |||||||||||||||||||||||||||||||||||    
T  40865162 agagattcttcaagaacttgaatcactgaagagcg 40865128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 429 - 466
Target Start/End: Complemental strand, 14932277 - 14932240
Alignment:
Q  429 acaatttaactttattttatcttatgctataaaaatag 466  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  14932277 acaatttaactttattttatcttttgctataaaaatag 14932240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 479
Target Start/End: Original strand, 1465105 - 1465152
Alignment:
Q  432 atttaactttattttatcttatgctataaaaatagcctatatataagc 479  Q
    |||||||||||||||||| ||||||||| ||||||| |||| ||||||    
T  1465105 atttaactttattttatcctatgctatagaaatagcttatacataagc 1465152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 429 - 475
Target Start/End: Complemental strand, 11615495 - 11615449
Alignment:
Q  429 acaatttaactttattttatcttatgctataaaaatagcctatatat 475  Q
    ||||||| ||||||||||||||| || |||||||||||| |||||||    
T  11615495 acaatttgactttattttatcttttgttataaaaatagcttatatat 11615449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 429 - 467
Target Start/End: Complemental strand, 35446042 - 35446004
Alignment:
Q  429 acaatttaactttattttatcttatgctataaaaatagc 467  Q
    ||||||||||||||||||||| | |||||||||||||||    
T  35446042 acaatttaactttattttatcatttgctataaaaatagc 35446004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 429 - 467
Target Start/End: Original strand, 42500308 - 42500346
Alignment:
Q  429 acaatttaactttattttatcttatgctataaaaatagc 467  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  42500308 acaatttaactttattttatcttttgatataaaaatagc 42500346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 478
Target Start/End: Complemental strand, 465941 - 465892
Alignment:
Q  429 acaatttaactttattttatcttatgctataaaaatagcctatatataag 478  Q
    ||||||||||||||||||||||| ||  ||| ||||||| ||||||||||    
T  465941 acaatttaactttattttatcttttgtcatagaaatagcttatatataag 465892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 478
Target Start/End: Complemental strand, 7674635 - 7674586
Alignment:
Q  429 acaatttaactttattttatcttatgctataaaaatagcctatatataag 478  Q
    ||||||||| ||||||||||||| || |||| ||||||| ||||||||||    
T  7674635 acaatttaaatttattttatcttttggtatagaaatagcttatatataag 7674586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 483
Target Start/End: Complemental strand, 19460107 - 19460055
Alignment:
Q  431 aatttaactttattttatcttatgctataaaaatagcctatatataagcactt 483  Q
    ||||||||||||||||||||| || ||||||| |||  |||| ||||||||||    
T  19460107 aatttaactttattttatcttttgttataaaagtagtgtatagataagcactt 19460055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 439 - 483
Target Start/End: Original strand, 28409466 - 28409510
Alignment:
Q  439 tttattttatcttatgctataaaaatagcctatatataagcactt 483  Q
    ||||||| ||||| || |||||||||||||||||||||| |||||    
T  28409466 tttatttcatcttttgttataaaaatagcctatatataaccactt 28409510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 488
Target Start/End: Complemental strand, 28776955 - 28776903
Alignment:
Q  436 aactttattttatcttatgctataaaaatagcctatatataagcacttttcat 488  Q
    |||||||||||||||| | | ||||||||||| |||| |||||||||| ||||    
T  28776955 aactttattttatctttttcaataaaaatagcttatacataagcacttatcat 28776903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 411 - 477
Target Start/End: Original strand, 50662797 - 50662863
Alignment:
Q  411 aaacaacttatagcttatacaatttaactttattttatcttatgctataaaaatagcctatatataa 477  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||| ||||    
T  50662797 aaacaacttatagcatatacaatttaacattattttatcttatgctataaaaatagcttatacataa 50662863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 467
Target Start/End: Original strand, 39438604 - 39438657
Alignment:
Q  413 acaacttatagcttatacaatttaactttattttatcttatgctataaaaatagc 467  Q
    ||||||||||||||| ||||||| |||||||||||||||||| |||| |||||||    
T  39438604 acaacttatagctta-acaatttgactttattttatcttatgttatagaaatagc 39438657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 429 - 480
Target Start/End: Original strand, 437515 - 437567
Alignment:
Q  429 acaatttaactttattttatcttatgctat-aaaaatagcctatatataagca 480  Q
    ||||||||||||||||||||||| |||||| ||||||||| |||| |||||||    
T  437515 acaatttaactttattttatcttttgctataaaaaatagcttatacataagca 437567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 472
Target Start/End: Complemental strand, 3155590 - 3155547
Alignment:
Q  429 acaatttaactttattttatcttatgctataaaaatagcctata 472  Q
    ||||||||||||||||||||||| ||||||| ||||||| ||||    
T  3155590 acaatttaactttattttatcttttgctatagaaatagcttata 3155547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 429 - 467
Target Start/End: Complemental strand, 41336747 - 41336710
Alignment:
Q  429 acaatttaactttattttatcttatgctataaaaatagc 467  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  41336747 acaatttaactttattttatctt-tgctataaaaatagc 41336710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 429 - 467
Target Start/End: Complemental strand, 43505943 - 43505905
Alignment:
Q  429 acaatttaactttattttatcttatgctataaaaatagc 467  Q
    |||||||||| |||||||||||| |||||||||||||||    
T  43505943 acaatttaacgttattttatcttttgctataaaaatagc 43505905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 430 - 480
Target Start/End: Complemental strand, 44138545 - 44138495
Alignment:
Q  430 caatttaactttattttatcttatgctataaaaatagcctatatataagca 480  Q
    |||||||||||||||||||||| ||||||| ||| ||| |||| |||||||    
T  44138545 caatttaactttattttatcttctgctatagaaacagcttatacataagca 44138495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 429 - 467
Target Start/End: Original strand, 50681172 - 50681210
Alignment:
Q  429 acaatttaactttattttatcttatgctataaaaatagc 467  Q
    |||||||||| |||||||||||||| |||||||||||||    
T  50681172 acaatttaacattattttatcttatcctataaaaatagc 50681210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 429 - 467
Target Start/End: Complemental strand, 51630098 - 51630060
Alignment:
Q  429 acaatttaactttattttatcttatgctataaaaatagc 467  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  51630098 acaatttaactttattttatcttttgctatataaatagc 51630060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 465
Target Start/End: Original strand, 13216290 - 13216323
Alignment:
Q  432 atttaactttattttatcttatgctataaaaata 465  Q
    |||||||||||||||||||| |||||||||||||    
T  13216290 atttaactttattttatcttttgctataaaaata 13216323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 467
Target Start/End: Original strand, 25904294 - 25904331
Alignment:
Q  430 caatttaactttattttatcttatgctataaaaatagc 467  Q
    |||||||||||||||||||||| |||| ||||||||||    
T  25904294 caatttaactttattttatcttttgctgtaaaaatagc 25904331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 388 - 479
Target Start/End: Complemental strand, 36070284 - 36070187
Alignment:
Q  388 agactgtttcagagaacttattgaaacaacttatagcttat------acaatttaactttattttatcttatgctataaaaatagcctatatataagc 479  Q
    |||||||||  ||||||||||  ||||||||||||||||||      ||||||||||||||||||||||| || ||||||||||||| ||| ||||||    
T  36070284 agactgtttaggagaacttatgaaaacaacttatagcttatccgaagacaatttaactttattttatcttttgttataaaaatagcccatacataagc 36070187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 431 - 472
Target Start/End: Original strand, 46252767 - 46252808
Alignment:
Q  431 aatttaactttattttatcttatgctataaaaatagcctata 472  Q
    ||||||||||||||||||||| || |||||||||||||||||    
T  46252767 aatttaactttattttatcttttgttataaaaatagcctata 46252808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 483
Target Start/End: Complemental strand, 289228 - 289173
Alignment:
Q  428 tacaatttaactttattttatcttatgctataaaaatagcctatatataagcactt 483  Q
    |||||||| ||||||||||||||| ||||| ||||||||| ||||  |||||||||    
T  289228 tacaatttgactttattttatcttttgctacaaaaatagcttatacttaagcactt 289173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 429 - 467
Target Start/End: Complemental strand, 47432083 - 47432045
Alignment:
Q  429 acaatttaactttattttatcttatgctataaaaatagc 467  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  47432083 acaatttaactttattttatctttttctataaaaatagc 47432045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 467
Target Start/End: Original strand, 9572192 - 9572229
Alignment:
Q  430 caatttaactttattttatcttatgctataaaaatagc 467  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  9572192 caatttaactttattttatcttttgctatagaaatagc 9572229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 466
Target Start/End: Original strand, 24915134 - 24915171
Alignment:
Q  429 acaatttaactttattttatcttatgctataaaaatag 466  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  24915134 acaatttaactttattttatcttctgctatagaaatag 24915171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 466
Target Start/End: Original strand, 41184733 - 41184770
Alignment:
Q  429 acaatttaactttattttatcttatgctataaaaatag 466  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  41184733 acaatttaacattattttatcttttgctataaaaatag 41184770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 479
Target Start/End: Original strand, 3887717 - 3887765
Alignment:
Q  431 aatttaactttattttatcttatgctataaaaatagcctatatataagc 479  Q
    ||||||||||||||||||||| ||||||  ||||||| |||| ||||||    
T  3887717 aatttaactttattttatcttttgctattgaaatagcttatacataagc 3887765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 473
Target Start/End: Complemental strand, 29904742 - 29904702
Alignment:
Q  433 tttaactttattttatcttatgctataaaaatagcctatat 473  Q
    ||||| ||||||||||||| ||||||||||||||| |||||    
T  29904742 tttaaatttattttatcttttgctataaaaatagcttatat 29904702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 471
Target Start/End: Complemental strand, 42174875 - 42174802
Alignment:
Q  402 aacttattgaaacaacttatagcttatacaa----tttaactttattttatcttatgctataaaaatagcctat 471  Q
    |||||||  |||||||||||||| |||||||    |||||| ||| |||||||| || ||||||||||||||||    
T  42174875 aacttataaaaacaacttatagcatatacaaaaactttaacattactttatcttttgatataaaaatagcctat 42174802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 477
Target Start/End: Complemental strand, 45145213 - 45145165
Alignment:
Q  429 acaatttaactttattttatcttatgctataaaaatagcctatatataa 477  Q
    |||||||||  |||||||||||| ||||||||||||||| |||| ||||    
T  45145213 acaatttaatattattttatcttttgctataaaaatagcttatacataa 45145165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 431 - 488
Target Start/End: Complemental strand, 4026802 - 4026745
Alignment:
Q  431 aatttaactttattttatcttatgctataaaaatagcctatatataagcacttttcat 488  Q
    ||||||||||||||||||||| ||||||||||||||| |||| |||||||||| ||||    
T  4026802 aatttaactttattttatcttttgctataaaaatagcttatagataagcacttatcat 4026745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 429 - 488
Target Start/End: Complemental strand, 36114406 - 36114347
Alignment:
Q  429 acaatttaactttattttatcttatgctataaaaatagcctatatataagcacttttcat 488  Q
    ||||||||||||||||||||||| ||  |||||||||||  |||||||||||||| ||||    
T  36114406 acaatttaactttattttatcttttgtcataaaaatagctaatatataagcacttatcat 36114347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 411 - 477
Target Start/End: Original strand, 5998765 - 5998833
Alignment:
Q  411 aaacaacttatagcttatacaa--tttaactttattttatcttatgctataaaaatagcctatatataa 477  Q
    |||||||||||| |||||  ||  ||||||||||||||||||| || |||||||||||| |||||||||    
T  5998765 aaacaacttataacttatgaaaagtttaactttattttatcttttgttataaaaatagcttatatataa 5998833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 488
Target Start/End: Complemental strand, 3611213 - 3611154
Alignment:
Q  429 acaatttaactttattttatcttatgctataaaaatagcctatatataagcacttttcat 488  Q
    ||||||||||||||||||| ||| ||||||| ||||| | |||| |||||||||| ||||    
T  3611213 acaatttaactttattttaccttttgctatagaaataacttatacataagcacttatcat 3611154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 472
Target Start/End: Original strand, 42420377 - 42420420
Alignment:
Q  429 acaatttaactttattttatcttatgctataaaaatagcctata 472  Q
    |||||||||| |||||||||||| ||||||||||||||| ||||    
T  42420377 acaatttaacgttattttatcttttgctataaaaatagcttata 42420420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 483
Target Start/End: Original strand, 18962125 - 18962175
Alignment:
Q  433 tttaactttattttatcttatgctataaaaatagcctatatataagcactt 483  Q
    ||||||||||||||||||| || ||||||||||||  ||| ||||||||||    
T  18962125 tttaactttattttatcttttgttataaaaatagctaatacataagcactt 18962175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 483
Target Start/End: Complemental strand, 28902060 - 28902010
Alignment:
Q  433 tttaactttattttatcttatgctataaaaatagcctatatataagcactt 483  Q
    ||||| ||||||||| |||||| |||||||||||| |||| ||||||||||    
T  28902060 tttaattttattttaacttatgttataaaaatagcttatacataagcactt 28902010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 483
Target Start/End: Original strand, 34054993 - 34055038
Alignment:
Q  438 ctttattttatcttatgctataaaaatagcctatatataagcactt 483  Q
    |||||||||||||| || |||| |||||||||||| ||||||||||    
T  34054993 ctttattttatcttttgttatagaaatagcctatacataagcactt 34055038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 483
Target Start/End: Complemental strand, 31461423 - 31461371
Alignment:
Q  431 aatttaactttattttatcttatgctataaaaatagcctatatataagcactt 483  Q
    ||||| ||||||||||||||| || |||| ||||||| ||||||||| |||||    
T  31461423 aatttgactttattttatcttttgttatagaaatagcttatatataaccactt 31461371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 488
Target Start/End: Complemental strand, 264355 - 264299
Alignment:
Q  432 atttaactttattttatcttatgctataaaaatagcctatatataagcacttttcat 488  Q
    |||||||||||||||||||| |||| || ||||||| ||||||||||||||| ||||    
T  264355 atttaactttattttatcttttgctttagaaatagcttatatataagcacttatcat 264299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 480
Target Start/End: Original strand, 29274312 - 29274363
Alignment:
Q  429 acaatttaactttattttatcttatgctataaaaatagcctatatataagca 480  Q
    ||||||| ||||||||||||||| ||||||| ||||||| |||| |||||||    
T  29274312 acaatttgactttattttatcttttgctatagaaatagcttatacataagca 29274363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 429 - 467
Target Start/End: Complemental strand, 8147689 - 8147651
Alignment:
Q  429 acaatttaactttattttatcttatgctataaaaatagc 467  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  8147689 acaattcaactttattttatcttttgctataaaaatagc 8147651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 483
Target Start/End: Complemental strand, 4248944 - 4248891
Alignment:
Q  430 caatttaactttattttatcttatgctataaaaatagcctatatataagcactt 483  Q
    |||||| ||||||||||||||| || |||  ||||||| |||||||||||||||    
T  4248944 caatttgactttattttatcttttgttattgaaatagcttatatataagcactt 4248891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 427 - 466
Target Start/End: Complemental strand, 45004755 - 45004716
Alignment:
Q  427 atacaatttaactttattttatcttatgctataaaaatag 466  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  45004755 atacaatttaactttattttatcttttgctataaaaatag 45004716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 429 - 479
Target Start/End: Complemental strand, 35536094 - 35536044
Alignment:
Q  429 acaatttaactttattttatcttatgctataaaaatagcctatatataagc 479  Q
    ||||||| |||||||||||||||||| |||| ||||||| |||| ||||||    
T  35536094 acaatttgactttattttatcttatgttatagaaatagcttatacataagc 35536044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 429 - 467
Target Start/End: Original strand, 45806409 - 45806447
Alignment:
Q  429 acaatttaactttattttatcttatgctataaaaatagc 467  Q
    |||||||||| |||||||||||| |||||||||||||||    
T  45806409 acaatttaacgttattttatcttttgctataaaaatagc 45806447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 465
Target Start/End: Complemental strand, 20258499 - 20258463
Alignment:
Q  429 acaatttaactttattttatcttatgctataaaaata 465  Q
    |||||||||| |||||||||||| |||||||||||||    
T  20258499 acaatttaacattattttatcttttgctataaaaata 20258463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 465
Target Start/End: Complemental strand, 20269563 - 20269527
Alignment:
Q  429 acaatttaactttattttatcttatgctataaaaata 465  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  20269563 acaatttaactttgttttatcttttgctataaaaata 20269527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 477
Target Start/End: Original strand, 28613617 - 28613665
Alignment:
Q  429 acaatttaactttattttatcttatgctataaaaatagcctatatataa 477  Q
    ||||||||||||| ||||||||| || |||||||||||| |||| ||||    
T  28613617 acaatttaactttgttttatcttttgttataaaaatagcttatacataa 28613665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 465
Target Start/End: Original strand, 34083608 - 34083644
Alignment:
Q  429 acaatttaactttattttatcttatgctataaaaata 465  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  34083608 acaatttaactttattttatcttttgctatagaaata 34083644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 467
Target Start/End: Original strand, 40689071 - 40689107
Alignment:
Q  431 aatttaactttattttatcttatgctataaaaatagc 467  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  40689071 aatttaactttattttatcttttgctatagaaatagc 40689107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 440 - 488
Target Start/End: Complemental strand, 47510087 - 47510039
Alignment:
Q  440 ttattttatcttatgctataaaaatagcctatatataagcacttttcat 488  Q
    ||||||||||||||| ||||||||| || ||||||||||| ||| ||||    
T  47510087 ttattttatcttatgttataaaaattgcttatatataagcccttatcat 47510039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 429 - 478
Target Start/End: Original strand, 21361 - 21410
Alignment:
Q  429 acaatttaactttattttatcttatgctataaaaatagcctatatataag 478  Q
    ||||||||||||||||||||||| | ||||||||||||| |||| |||||    
T  21361 acaatttaactttattttatcttttcctataaaaatagcttatacataag 21410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 488
Target Start/End: Original strand, 35127454 - 35127513
Alignment:
Q  429 acaatttaactttattttatcttatgctataaaaatagcctatatataagcacttttcat 488  Q
    |||||||||||||| | |||||| || |||| |||||||||||| |||||||||| ||||    
T  35127454 acaatttaactttagtatatcttttgttatagaaatagcctatacataagcacttatcat 35127513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 429 - 467
Target Start/End: Original strand, 30956709 - 30956747
Alignment:
Q  429 acaatttaactttattttatcttatgctataaaaatagc 467  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  30956709 acaatttaactttattttatcttttgctatagaaatagc 30956747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 429 - 467
Target Start/End: Original strand, 30972521 - 30972559
Alignment:
Q  429 acaatttaactttattttatcttatgctataaaaatagc 467  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  30972521 acaatttaactttattttatcttttgctatagaaatagc 30972559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 483
Target Start/End: Complemental strand, 31364883 - 31364834
Alignment:
Q  434 ttaactttattttatcttatgctataaaaatagcctatatataagcactt 483  Q
    |||||||||||||| ||| || |||||||||||| ||||||| |||||||    
T  31364883 ttaactttattttaccttttgttataaaaatagcttatatattagcactt 31364834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 474
Target Start/End: Original strand, 46778310 - 46778355
Alignment:
Q  429 acaatttaactttattttatcttatgctataaaaatagcctatata 474  Q
    ||||||||||||||||||||||  ||||||| ||||||| ||||||    
T  46778310 acaatttaactttattttatctcttgctatagaaatagcttatata 46778355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 477
Target Start/End: Original strand, 2128334 - 2128382
Alignment:
Q  429 acaatttaactttattttatcttatgctataaaaatagcctatatataa 477  Q
    ||||||||||||||||||||||| || |||| ||||||| |||| ||||    
T  2128334 acaatttaactttattttatcttttgttatagaaatagcttatacataa 2128382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 429 - 483
Target Start/End: Complemental strand, 1112840 - 1112786
Alignment:
Q  429 acaatttaactttattttatcttatgctataaaaatagcctatatataagcactt 483  Q
    |||||||||| |||||||||||| || |||| ||||||| |||| ||||||||||    
T  1112840 acaatttaaccttattttatcttttgttatagaaatagcatatacataagcactt 1112786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 431 - 477
Target Start/End: Original strand, 2364558 - 2364604
Alignment:
Q  431 aatttaactttattttatcttatgctataaaaatagcctatatataa 477  Q
    ||||| ||||||||||||||| ||||||||||||||| |||| ||||    
T  2364558 aatttgactttattttatcttttgctataaaaatagcgtatacataa 2364604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 489
Target Start/End: Complemental strand, 10114466 - 10114417
Alignment:
Q  440 ttattttatcttatgctataaaaatagcctatatataagcacttttcatc 489  Q
    |||||||||||| ||||||| ||||||| |||| |||||||||| |||||    
T  10114466 ttattttatcttttgctatagaaatagcttatacataagcacttatcatc 10114417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 479
Target Start/End: Complemental strand, 21653067 - 21653018
Alignment:
Q  430 caatttaactttattttatcttatgctataaaaatagcctatatataagc 479  Q
    |||||||||||||||||||||| || || | |||||||||||| ||||||    
T  21653067 caatttaactttattttatcttttgttacataaatagcctatacataagc 21653018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 478
Target Start/End: Original strand, 41475143 - 41475192
Alignment:
Q  429 acaatttaactttattttatcttatgctataaaaatagcctatatataag 478  Q
    ||||||||||| ||||||||||| |||||||||| |||| |||| |||||    
T  41475143 acaatttaactgtattttatcttttgctataaaattagcttatacataag 41475192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 483
Target Start/End: Original strand, 41620376 - 41620428
Alignment:
Q  431 aatttaactttattttatcttatgctataaaaatagcctatatataagcactt 483  Q
    ||||| ||||||||||||||| || || ||||||| | |||||||||||||||    
T  41620376 aatttgactttattttatcttttgttacaaaaataacttatatataagcactt 41620428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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