View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1300_low_37 (Length: 249)
Name: NF1300_low_37
Description: NF1300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1300_low_37 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 10 - 249
Target Start/End: Original strand, 43486361 - 43486596
Alignment:
| Q |
10 |
aacaatatagggcataactaacagcatcatgctaacttaattaacactacttaaactatacatacacttttaagagtgattacacaagttccaaattatt |
109 |
Q |
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| T |
43486361 |
aacaatatagggcataactaaca------tgctaacttaattaacactacttaaactatacatacacttttaaaagtgattacacaagttccaaattatt |
43486454 |
T |
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| Q |
110 |
tatatttgnnnnnnnaactagtgtctcatagacacttgttaacattttaggagattcaaagtatt---nnnnnnnntgtaagattataaaagtaatttta |
206 |
Q |
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| T |
43486455 |
tatatttgtttatttaactagtgtctcatagacacttgttaatattttaggagatttaaagtattaaaaaaaaaaatgtaagattataaaagtaatttta |
43486554 |
T |
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| Q |
207 |
aaatccagggatgcaagtgcatcacctcaccctatgtagctcc |
249 |
Q |
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| T |
43486555 |
aaatccagggatgcaagtgcatcacctca-cctatgtagctcc |
43486596 |
T |
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