View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1300_low_40 (Length: 236)
Name: NF1300_low_40
Description: NF1300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1300_low_40 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 55907791 - 55908013
Alignment:
| Q |
1 |
tgaagaacttgactttagtagtagtaatcctttcgctagtagagattttgatatgaatgtttgggtaaagactatggcaatggtgcttcctaagctccgc |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55907791 |
tgaagaacttgacttcagtagtagtaatcctttcgctagtagagattttgatatgaatgtttgggtaaagactatggcaatggtgcttcctaagctccgc |
55907890 |
T |
|
| Q |
101 |
aaggttaatctctcgggttattataatatagatgactcgtcacttttgcatttatgtaagaattgtgagtttcttgaagaggttatgatgttgaaatgtc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55907891 |
aaggttaatctctcgggttattataatatagacgactcgtcacttttgcatttatgtaagaattgtgagtttcttgaagaggttatgatgttgaaatgtc |
55907990 |
T |
|
| Q |
201 |
catttttaactcatgatgatgtc |
223 |
Q |
| |
|
|||||||||||||||||| |||| |
|
|
| T |
55907991 |
catttttaactcatgatggtgtc |
55908013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 192
Target Start/End: Complemental strand, 547908 - 547773
Alignment:
| Q |
57 |
atgtttgggtaaagactatggcaatggtgcttcctaagctccgcaaggttaatctctcgggttattataatatagatgactcgtcacttttgcatttatg |
156 |
Q |
| |
|
||||| |||||||| ||||| ||| | ||||||||||||||||||||||||| | || ||| |||| ||||| ||||||| | ||||| || || || |
|
|
| T |
547908 |
atgttggggtaaaggctatgtcaacagcgcttcctaagctccgcaaggttaatttatctggtcattactatataaatgactcattgctttttcacttgtg |
547809 |
T |
|
| Q |
157 |
taagaattgtgagtttcttgaagaggttatgatgtt |
192 |
Q |
| |
|
| | | |||||||||||| |||||| || ||||||| |
|
|
| T |
547808 |
tcaaagttgtgagtttctcgaagagtttgtgatgtt |
547773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 195
Target Start/End: Original strand, 1527362 - 1527472
Alignment:
| Q |
85 |
gcttcctaagctccgcaaggttaatctctcgggttattataatatagatgactcgtcacttttgcatttatgtaagaattgtgagtttcttgaagaggtt |
184 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||| || | || | ||||||||| |||||||| || ||||| ||||||| |||||| ||||| || |
|
|
| T |
1527362 |
gcttcctaagctccacaaggttaatctctctggtcatcactatgcaaatgactcgttgcttttgcacttgtgtaaaaattgtgtatttcttcaagagatt |
1527461 |
T |
|
| Q |
185 |
atgatgttgaa |
195 |
Q |
| |
|
|||||||||| |
|
|
| T |
1527462 |
ttgatgttgaa |
1527472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 1036727 - 1036949
Alignment:
| Q |
1 |
tgaagaacttgactttagtagtagtaatcctttcgctagtagagattttgatatgaatgtttgggtaaagactatggcaatggtgcttcctaagctccgc |
100 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1036727 |
tgaagaacttgacttcaatagtagtaatcctttcgctagtagagattttgatatgaatgtttgggtaaagactatggcaatggtgcttcctaagctccgc |
1036826 |
T |
|
| Q |
101 |
aaggttaatctctcgggttattataatatagatgactcgtcacttttgcatttatgtaagaattgtgagtttcttgaagaggttatgatgttgaaatgtc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1036827 |
aaggttaatctctcgggttattataatatagacgactcgtcacttttgcatttatgtaagaattgtgagtttcttgaagaggttatgatgttgaaatgtc |
1036926 |
T |
|
| Q |
201 |
catttttaactcatgatgatgtc |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
1036927 |
catttttaactcatgatgatgtc |
1036949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 184
Target Start/End: Original strand, 17627169 - 17627281
Alignment:
| Q |
72 |
ctatggcaatggtgcttcctaagctccgcaaggttaatctctcgggttattataatatagatgactcgtcacttttgcatttatgtaagaattgtgagtt |
171 |
Q |
| |
|
||||| |||||||||||||||||||||||||| | ||| | || || |||| ||||| |||||| | ||||||||| || ||||| ||||||||||| |
|
|
| T |
17627169 |
ctatgtcaatggtgcttcctaagctccgcaagataaatttatctcgtcattacgatataagtgactcattacttttgcacttgtgtaaaaattgtgagtt |
17627268 |
T |
|
| Q |
172 |
tcttgaagaggtt |
184 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
17627269 |
tctcgaagaggtt |
17627281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 155 - 198
Target Start/End: Complemental strand, 44244857 - 44244814
Alignment:
| Q |
155 |
tgtaagaattgtgagtttcttgaagaggttatgatgttgaaatg |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
44244857 |
tgtaagaattgtgagtttcttgaagaggttaggatgttgaaatg |
44244814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University