View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1300_low_44 (Length: 220)

Name: NF1300_low_44
Description: NF1300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1300_low_44
NF1300_low_44
[»] chr4 (2 HSPs)
chr4 (1-121)||(54657531-54657651)
chr4 (3-113)||(43733593-43733703)
[»] chr5 (1 HSPs)
chr5 (25-117)||(28570569-28570661)
[»] chr8 (1 HSPs)
chr8 (1-91)||(29928720-29928810)
[»] chr7 (2 HSPs)
chr7 (40-80)||(34763013-34763053)
chr7 (40-80)||(34763794-34763834)


Alignment Details
Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 54657651 - 54657531
Alignment:
Q  1 tgcaagtagtcggatttaattaataatagagatcatgttgagtctctaaagcataaaccataagccataatagagttattatggaaattggtcgtgtcaa 100  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54657651 tgcaagtagttagatttaattaataatagagatcatgttgagtctctaaagcataaaccataagccataatagagttattatggaaattggtcgtgtcaa 54657552  T
Q  101 cattgcatttgatgtggccgg 121  Q
    |||||||||||||||||||||    
T  54657551 cattgcatttgatgtggccgg 54657531  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 43733703 - 43733593
Alignment:
Q  3 caagtagtcggatttaattaataatagagatcatgttgagtctctaaagcataaaccataagccataatagagttattatggaaattggtcgtgtcaaca 102  Q
    ||||||||||||||||  ||||||||||||||| ||||||||||||||||||||| | |||||  ||||| ||||||||| |||||||  ||||||||||    
T  43733703 caagtagtcggatttacctaataatagagatcacgttgagtctctaaagcataaatcgtaagcagtaataaagttattattgaaattgaccgtgtcaaca 43733604  T
Q  103 ttgcatttgat 113  Q
    |||||||||||    
T  43733603 ttgcatttgat 43733593  T

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Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 28570569 - 28570661
Alignment:
Q  25 aatagagatcatgttgagtctctaaagcataaaccataagccataatagagttattatggaaattggtcgtgtcaacattgcatttgatgtgg 117  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||  | ||||||||||||||||||||||    
T  28570569 aatagagatcatgttgagtctctaaagcataaactgtaagccataatagagttattattgaaattggatgcgtcaacattgcatttgatgtgg 28570661  T

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Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 29928720 - 29928810
Alignment:
Q  1 tgcaagtagtcggatttaattaataatagagatcatgttgagtctctaaagcataaaccataagccataatagagttattatggaaattgg 91  Q
    |||||||||||  |||||   ||||| ||||||||||||||||||||||||||||||   |||||||||||| ||||||||| ||||||||    
T  29928720 tgcaagtagtcacatttatcaaataacagagatcatgttgagtctctaaagcataaattgtaagccataataaagttattattgaaattgg 29928810  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 34763013 - 34763053
Alignment:
Q  40 gagtctctaaagcataaaccataagccataatagagttatt 80  Q
    |||||||||||||||||||||||  |||| |||||||||||    
T  34763013 gagtctctaaagcataaaccatagcccatgatagagttatt 34763053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 34763834 - 34763794
Alignment:
Q  40 gagtctctaaagcataaaccataagccataatagagttatt 80  Q
    |||||||||||||||||||||||  |||| |||||||||||    
T  34763834 gagtctctaaagcataaaccatagcccatgatagagttatt 34763794  T

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