View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1300_low_6 (Length: 444)
Name: NF1300_low_6
Description: NF1300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1300_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 222 - 296
Target Start/End: Complemental strand, 29979433 - 29979359
Alignment:
| Q |
222 |
ttataatgaatgtaaagtgaaaaataataaattgaaagtgatgcatataatattaatcactcatgtagggagagg |
296 |
Q |
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| T |
29979433 |
ttataatgaatgtaaaatgaaaaataataaattgaaagtgatgcatgtaatattaatcacatatgtagggagagg |
29979359 |
T |
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Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 303 - 371
Target Start/End: Complemental strand, 29979316 - 29979248
Alignment:
| Q |
303 |
tttatgtgatatgatgcctctaatggaacaacaagattctcatcttcacattaatgatatttgggttca |
371 |
Q |
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| T |
29979316 |
tttatgtgacaggatgcctctagtggaacaacaagattctcatctttacattaatgatatttgggttca |
29979248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 31 - 145
Target Start/End: Complemental strand, 29979667 - 29979552
Alignment:
| Q |
31 |
aaataagttgagttagtcagcctccatatcaagactattataattgacacataaatgttgttattactatctccttcccaaaata--ataccatttcata |
128 |
Q |
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| T |
29979667 |
aaataagttgagttacacatcctccgtatcaagaccaatataattgacacat-tttattgttattactagctccgtcccaacataatatatcatttcata |
29979569 |
T |
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| Q |
129 |
caaattaataaaaagtt |
145 |
Q |
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| T |
29979568 |
caaattaataaaaagtt |
29979552 |
T |
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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 303 - 372
Target Start/End: Original strand, 41414669 - 41414738
Alignment:
| Q |
303 |
tttatgtgatatgatgcctctaatggaacaacaagattctcatcttcacattaatgatatttgggttcat |
372 |
Q |
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| T |
41414669 |
tttatgtgataagatacctctagtggaacaacaagattcttgtcttcacattaaagatatttgtgttcat |
41414738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 278
Target Start/End: Complemental strand, 32945075 - 32945027
Alignment:
| Q |
230 |
aatgtaaagtgaaaaataataaattgaaagtgatgcatataatattaat |
278 |
Q |
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| T |
32945075 |
aatgtaaagtgaaaaataataacttcaaagtgatacacatgatattaat |
32945027 |
T |
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