View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1300_low_7 (Length: 439)
Name: NF1300_low_7
Description: NF1300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1300_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 30 - 433
Target Start/End: Original strand, 10434588 - 10434991
Alignment:
| Q |
30 |
aaatcgttttactacaaagtaacattcaattaggatcaaaattgcaaaatcaagttcatcgaacattcttcatagttcatttgagttttgctgatcctag |
129 |
Q |
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| T |
10434588 |
aaatcgttttactacaaagtaacattcaattaggatcaaaattgcaaaatcaagttcatcgaacactcttcatagttcatttgagttttgctgatcctag |
10434687 |
T |
|
| Q |
130 |
ctgagagttggaggatggaaggggaataggccaacagggtaccttgttatatagcgtagatcgcaatcattacaaagagagtaatttgaacagacataga |
229 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10434688 |
ctgagagttggaggatggaaggggaataggccaacaaggtaccttgttatatagcgtagatcgcaatcattacaaagagagtaatttgaacagacataga |
10434787 |
T |
|
| Q |
230 |
aagcatagctacattactaaccttattgtcctgaaaaaccagctcaatatcagagagatcttgttgggcttctaatattgctttcaatgaaggaatcaca |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10434788 |
aagcatagctacattactaaccttattgtcctgaaaaaccagctcaatatcagagagatcttgttgggcttctaatattgctttcaatgaaggaatcaca |
10434887 |
T |
|
| Q |
330 |
tcctcctccatcatctgaggtaaaggcttaactggagctttagcaggagtcttctttactgcttctgcttttggagcttcttcttttacctcctcctttg |
429 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
10434888 |
tcctcctccatcatctgaggtaaaggcttaactggagctttagcaggagtcttctttactgctgctgcttttggagcttcttcctttacctcctcctttg |
10434987 |
T |
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| Q |
430 |
tttc |
433 |
Q |
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|||| |
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| T |
10434988 |
tttc |
10434991 |
T |
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