View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1300_low_8 (Length: 429)
Name: NF1300_low_8
Description: NF1300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1300_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 98 - 371
Target Start/End: Complemental strand, 42381120 - 42380847
Alignment:
| Q |
98 |
cgaacttcgtgttaatgctaataatcccttgtaaaatagacttgtacacatcataattacnnnnnnnngtcatgtatgtgacaacattttttcaattgat |
197 |
Q |
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| T |
42381120 |
cgaacttcgtgttaatgctaataatcccttgtaaaatagatttgtacacatcataattacttttttttgtcatgtatgtgacaacattttttcaattgat |
42381021 |
T |
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| Q |
198 |
atgatgccatgtttcacacctattgttctgttttattttctcaaaccatttcaatatgatagnnnnnnnttattgattaaaaatttcgaccaagaaactg |
297 |
Q |
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| T |
42381020 |
atgatgccatgtttcacacctattgttctgttttattttctcaaaccatttcaatatgatagaaacaaattattgattaaaaatttcgaacaagaaactg |
42380921 |
T |
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| Q |
298 |
ggacgagaacggtgacaccacttgcaacattgacattaatacataagaaatattatgattatgagttcaaactc |
371 |
Q |
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| T |
42380920 |
ggacgagaacggtgacaccacttgcaccattgacattaatacataagaaatattatgattatgagttcaaactc |
42380847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 98 - 371
Target Start/End: Complemental strand, 42409834 - 42409561
Alignment:
| Q |
98 |
cgaacttcgtgttaatgctaataatcccttgtaaaatagacttgtacacatcataattacnnnnnnnngtcatgtatgtgacaacattttttcaattgat |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42409834 |
cgaacttcgtgttaatgctaataatcccttgtaaaatagatttgtacacatcataattacttttttttgtcatgtatgtgacaacattttttcaattgat |
42409735 |
T |
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| Q |
198 |
atgatgccatgtttcacacctattgttctgttttattttctcaaaccatttcaatatgatagnnnnnnnttattgattaaaaatttcgaccaagaaactg |
297 |
Q |
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| T |
42409734 |
atgatgccatgtttcacacctattgttctgttttattttctcaaaccatttcaatatgatagaaacaaattattgattaaaaatttcgaacaagaaactg |
42409635 |
T |
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| Q |
298 |
ggacgagaacggtgacaccacttgcaacattgacattaatacataagaaatattatgattatgagttcaaactc |
371 |
Q |
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| T |
42409634 |
ggacgagaacggtgacaccacttgcaccattgacattaatacataagaaatattatgattatgagttcaaactc |
42409561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 330 - 394
Target Start/End: Complemental strand, 42380727 - 42380663
Alignment:
| Q |
330 |
acattaatacataagaaatattatgattatgagttcaaactcactgctagtatagtaattgatgt |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42380727 |
acattaatacataagaaatattatgattatgagttcaaactcactgctagtatcgtaattgatgt |
42380663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 330 - 394
Target Start/End: Complemental strand, 42409441 - 42409377
Alignment:
| Q |
330 |
acattaatacataagaaatattatgattatgagttcaaactcactgctagtatagtaattgatgt |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42409441 |
acattaatacataagaaatattatgattatgagttcaaactcactgctagtatcgtaattgatgt |
42409377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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