View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1300_low_9 (Length: 420)
Name: NF1300_low_9
Description: NF1300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1300_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 21 - 329
Target Start/End: Complemental strand, 37280365 - 37280057
Alignment:
| Q |
21 |
agtctgtaatattttcaggtatatatggattttaaatgttctattgctaggtgtttatgtaacattggttttttctagttgaacgaagacccttccttca |
120 |
Q |
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| T |
37280365 |
agtctgtaatattttcaggtatatatggattttaaatgttctattgctaggtgtttatgtaacattggttttttctagttgaacgaagacccttccttca |
37280266 |
T |
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| Q |
121 |
aaccacagggtgggagactaggagaaagtgacatggattatgatacagatgaaaaatcaatggcatcactaagacgtcgtcttagaagagctcgtgagca |
220 |
Q |
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| T |
37280265 |
aaccacagggtgggagactaggagaaagtgacatggattatgatacagatgaaaaatcaatggcatcactaagacgtcgtcttagaagagctcgtgagca |
37280166 |
T |
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| Q |
221 |
gtattatcggtacagaaggtagacactgatcaatttgctacaaaagttggtactaagttctatcaaaatagagaatttctgtgatgatcggccttcagta |
320 |
Q |
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| T |
37280165 |
gtattatcggtacagaaggtagacactgatcaatttgctacaaaagttggtactaagttctatcaaaatcaagaatttctgtgatgatcggccttcagta |
37280066 |
T |
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| Q |
321 |
aaacatcaa |
329 |
Q |
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| T |
37280065 |
aaacatcaa |
37280057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 105 - 241
Target Start/End: Complemental strand, 39366386 - 39366250
Alignment:
| Q |
105 |
gaagacccttccttcaaaccacagggtgggagactaggagaaagtgacatggattatgatacagatgaaaaatcaatggcatcactaagacgtcgtctta |
204 |
Q |
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| T |
39366386 |
gaagatccgtccttcaaaccacaaggtgggcaattaggggaaaatgatatggattatgatacagatgagaagtcaatggctaaactaaggcgtcatcttc |
39366287 |
T |
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| Q |
205 |
gaagagctcgtgagcagtattatcggtacagaaggta |
241 |
Q |
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| T |
39366286 |
ggaatgctcgtgaggagtattatagatacaaaaggta |
39366250 |
T |
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