View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13010_high_12 (Length: 249)

Name: NF13010_high_12
Description: NF13010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13010_high_12
NF13010_high_12
[»] chr1 (5 HSPs)
chr1 (20-227)||(6585212-6585419)
chr1 (164-227)||(30713486-30713549)
chr1 (174-227)||(40703928-40703981)
chr1 (152-227)||(28381434-28381509)
chr1 (155-227)||(5598060-5598132)
[»] chr3 (4 HSPs)
chr3 (120-227)||(23873615-23873722)
chr3 (154-210)||(8441012-8441068)
chr3 (155-227)||(6985375-6985447)
chr3 (175-227)||(8437807-8437859)
[»] chr4 (3 HSPs)
chr4 (154-227)||(50016148-50016221)
chr4 (154-227)||(54684080-54684153)
chr4 (157-227)||(17874366-17874436)
[»] chr6 (3 HSPs)
chr6 (154-227)||(15601794-15601867)
chr6 (167-227)||(28633864-28633924)
chr6 (154-226)||(33820904-33820976)
[»] chr5 (2 HSPs)
chr5 (152-227)||(35836680-35836755)
chr5 (154-220)||(33019022-33019088)
[»] chr7 (3 HSPs)
chr7 (154-227)||(6344237-6344310)
chr7 (154-227)||(2317377-2317450)
chr7 (164-227)||(42964734-42964797)
[»] chr2 (3 HSPs)
chr2 (154-227)||(36930655-36930728)
chr2 (155-227)||(13415154-13415226)
chr2 (155-227)||(6728374-6728446)
[»] chr8 (1 HSPs)
chr8 (155-227)||(39298070-39298142)
[»] scaffold0750 (1 HSPs)
scaffold0750 (152-227)||(5688-5763)


Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 6585419 - 6585212
Alignment:
Q  20 cactgtacttctaaacagccttcaaccagtattgtctggttagtcgcaataagattgaaacattgttactataaatgtttttatacatcggctagcaatg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6585419 cactgtacttctaaacagccttcaaccagtattgtctggttagtcgcaataagattgaaacattgttactataaatgtttttatacatcggctagcaatg 6585320  T
Q  120 ttgtggtttttctttgactgattgtttgtatatttagtagtctcttcggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagttt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||| |||||||||| |||||    
T  6585319 ttgtggtttttctttgactgattgtttgtatatttagtagtctcttcagtacgtcttgtgctgagaagattgctttgtcagtgctaatataatcaagttt 6585220  T
Q  220 tgtttgtt 227  Q
    | ||||||    
T  6585219 tatttgtt 6585212  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 30713486 - 30713549
Alignment:
Q  164 ttcggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgtt 227  Q
    |||||||| |||||||||| |||||||| | ||| ||||||||||||||||| |||||||||||    
T  30713486 ttcggtacatcttgtgctgtgaagattgctatggtagtgttaatataatccatttttgtttgtt 30713549  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 40703981 - 40703928
Alignment:
Q  174 cttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgtt 227  Q
    ||||| |||||||||||| ||| ||||||||||||||||||| |||||||||||    
T  40703981 cttgtactgagaagattgttttagcagtgttaatataatccatttttgtttgtt 40703928  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 227
Target Start/End: Complemental strand, 28381509 - 28381434
Alignment:
Q  152 tttagtagtctcttcggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgtt 227  Q
    ||||||||||| |||||||| ||||||||||||| |  || ||| ||| ||||||||||||||| |||| ||||||    
T  28381509 tttagtagtcttttcggtacatcttgtgctgagagggctgctttagcaatgttaatataatccatttttatttgtt 28381434  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 227
Target Start/End: Original strand, 5598060 - 5598132
Alignment:
Q  155 agtagtctcttcggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgtt 227  Q
    |||||||| |||||||| ||||||||||||  |  || ||| |||||||||||||| |||| |||||||||||    
T  5598060 agtagtcttttcggtacatcttgtgctgagggggctgctttagcagtgttaatatattccatttttgtttgtt 5598132  T

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Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 120 - 227
Target Start/End: Complemental strand, 23873722 - 23873615
Alignment:
Q  120 ttgtggtttttctttgactgattgtttgtatatttagtagtctcttcggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagttt 219  Q
    ||||||||| ||||||||||| |||||||| ||||||||||||||| ||||||||||| |||||| ||| |  |||| |||||||||||||||||| |||    
T  23873722 ttgtggtttctctttgactgactgtttgtaaatttagtagtctctttggtacgtcttgcgctgaggagacttttttgtcagtgttaatataatccatttt 23873623  T
Q  220 tgtttgtt 227  Q
    ||||||||    
T  23873622 tgtttgtt 23873615  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 8441012 - 8441068
Alignment:
Q  154 tagtagtctcttcggtacgtcttgtgctgagaagattgatttggcagtgttaatata 210  Q
    ||||||||| |||||||| |||||||||| |||||||| | ||||||||||||||||    
T  8441012 tagtagtcttttcggtacatcttgtgctgtgaagattgctatggcagtgttaatata 8441068  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 6985447 - 6985375
Alignment:
Q  155 agtagtctcttcggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgtt 227  Q
    |||||||| |||||||| ||||||| ||||  |  || ||| |||||||||||||| |||| |||||||||||    
T  6985447 agtagtcttttcggtacatcttgtgttgagtgggctgctttagcagtgttaatatattccatttttgtttgtt 6985375  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 8437807 - 8437859
Alignment:
Q  175 ttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgtt 227  Q
    |||||||| |||||||| | |||||||||||||||| |||| ||||| |||||    
T  8437807 ttgtgctgtgaagattgctatggcagtgttaatatattccatttttgcttgtt 8437859  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 50016148 - 50016221
Alignment:
Q  154 tagtagtctcttcggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgtt 227  Q
    ||||||||| |||||||| |||||||||| |||||||| | ||||||||||||||||||||| ||||| |||||    
T  50016148 tagtagtcttttcggtacatcttgtgctgtgaagattgctatggcagtgttaatataatccatttttgcttgtt 50016221  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 54684153 - 54684080
Alignment:
Q  154 tagtagtctcttcggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgtt 227  Q
    ||||||||| |||||||| |||||||||| |||||||| | ||||||||||||||||||||| ||||| |||||    
T  54684153 tagtagtcttttcggtacatcttgtgctgtgaagattgctatggcagtgttaatataatccatttttgcttgtt 54684080  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 17874436 - 17874366
Alignment:
Q  157 tagtctcttcggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgtt 227  Q
    |||||| |||||||| || |||||||||| |  || ||| ||||||||||||||||| | |||||||||||    
T  17874436 tagtcttttcggtacatcatgtgctgagagggctgctttagcagtgttaatataatcaatttttgtttgtt 17874366  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 15601867 - 15601794
Alignment:
Q  154 tagtagtctcttcggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgtt 227  Q
    ||||||||| |||||||| |||||||||| |||||||| | ||||||||||||||||||| | ||||| |||||    
T  15601867 tagtagtcttttcggtacatcttgtgctgtgaagattgctatggcagtgttaatataatctatttttgcttgtt 15601794  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 28633864 - 28633924
Alignment:
Q  167 ggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgtt 227  Q
    ||||| ||||||||||||| ||||| | ||||||||||| ||||||||| ||||| |||||    
T  28633864 ggtacatcttgtgctgagaggattgctatggcagtgttattataatccatttttgcttgtt 28633924  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 226
Target Start/End: Complemental strand, 33820976 - 33820904
Alignment:
Q  154 tagtagtctcttcggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgt 226  Q
    ||||||||| ||||||||  ||||||||||||  | || | |||| ||||||||||||| || ||||||||||    
T  33820976 tagtagtcttttcggtacaccttgtgctgagagaactgctatggcggtgttaatataattcatttttgtttgt 33820904  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 152 - 227
Target Start/End: Complemental strand, 35836755 - 35836680
Alignment:
Q  152 tttagtagtctcttcggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgtt 227  Q
    ||||||||||| |||||||| ||||||||||||| || || | | |||||||||||||||| || |||||||||||    
T  35836755 tttagtagtcttttcggtacatcttgtgctgagaggactgctatagcagtgttaatataattcatttttgtttgtt 35836680  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 220
Target Start/End: Original strand, 33019022 - 33019088
Alignment:
Q  154 tagtagtctcttcggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagtttt 220  Q
    ||||||||| |||||||| |||| ||||| |||||||| | || || ||||||||||||||| ||||    
T  33019022 tagtagtcttttcggtacatcttatgctgtgaagattgttatgacaatgttaatataatccattttt 33019088  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 6344237 - 6344310
Alignment:
Q  154 tagtagtctcttcggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgtt 227  Q
    ||||||||| |||||||| |||||||||| |||||||| | || ||||||||||||| |||| ||||| |||||    
T  6344237 tagtagtcttttcggtacatcttgtgctgtgaagattgctatgacagtgttaatatattccatttttgcttgtt 6344310  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 2317450 - 2317377
Alignment:
Q  154 tagtagtctcttcggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgtt 227  Q
    ||||||||| ||||||||  ||||||||| ||||| || | ||| ||||||||||||||||| |||| ||||||    
T  2317450 tagtagtcttttcggtacaccttgtgctgcgaagactgctatggtagtgttaatataatccatttttatttgtt 2317377  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 42964734 - 42964797
Alignment:
Q  164 ttcggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgtt 227  Q
    |||||||| ||||||||||||  |  || ||| ||||||||||||||||||| |||||||||||    
T  42964734 ttcggtacatcttgtgctgagggggctgctttagcagtgttaatataatccatttttgtttgtt 42964797  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 36930728 - 36930655
Alignment:
Q  154 tagtagtctcttcggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgtt 227  Q
    ||||||||| |||||||| |||||||||| |||||||| | ||| |||||||||||| |||| ||||| |||||    
T  36930728 tagtagtcttttcggtacatcttgtgctgtgaagattgttatggtagtgttaatatattccatttttgcttgtt 36930655  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 13415226 - 13415154
Alignment:
Q  155 agtagtctcttcggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgtt 227  Q
    |||||||| |||||||| ||||||||||||| |  || ||| | ||||||||||||||||| |||||||||||    
T  13415226 agtagtcttttcggtacatcttgtgctgagagggctgctttagtagtgttaatataatccatttttgtttgtt 13415154  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 227
Target Start/End: Original strand, 6728374 - 6728446
Alignment:
Q  155 agtagtctcttcggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgtt 227  Q
    |||||||| |||||||| |||| |||||| | |  || ||| ||||||||||||||||||| |||||||||||    
T  6728374 agtagtcttttcggtacatcttatgctgaaagggctgctttagcagtgttaatataatccatttttgtttgtt 6728446  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 227
Target Start/End: Original strand, 39298070 - 39298142
Alignment:
Q  155 agtagtctcttcggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgtt 227  Q
    |||||||| |||||||| ||||||||||||| |  || ||| |||||||||||||||| || |||||||||||    
T  39298070 agtagtcttttcggtacatcttgtgctgagagggctgctttagcagtgttaatataattcatttttgtttgtt 39298142  T

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Target: scaffold0750 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0750
Description:

Target: scaffold0750; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 227
Target Start/End: Complemental strand, 5763 - 5688
Alignment:
Q  152 tttagtagtctcttcggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgtt 227  Q
    ||||||||||| |||||||| ||||||||||||  |  || ||| |||||||||||||| |||| |||||||||||    
T  5763 tttagtagtcttttcggtacatcttgtgctgagtgggctgctttagcagtgttaatatattccatttttgtttgtt 5688  T

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