View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13010_high_2 (Length: 553)
Name: NF13010_high_2
Description: NF13010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13010_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 17 - 543
Target Start/End: Complemental strand, 51989970 - 51989440
Alignment:
| Q |
17 |
actaatgtgtttaactttaacatgagaggtttctgtcnnnnnnnnnnn--ctttaacatgagagacattcagcaagaaaatattaaaaacattaccttaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
51989970 |
actaatgtgtttaactttaacatgagaggtttctgtcaaaaaaaaaaaaactttaacatgagagacattcagcaagaaaatattataaacattaccttaa |
51989871 |
T |
|
| Q |
115 |
gattacaaagtgaaagttctttcaaagacttgccctttatctcaaaaaatgcagcaattgcttcatcactgtaacgaaggaaaagttatatcattattag |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51989870 |
gattacaaagtgaaagttctttcaaagacttgccctttatctcaaaaaatgcagcaattgcttcatcactgtaacgaaggaaaagttatatcattattag |
51989771 |
T |
|
| Q |
215 |
tcaattgaaattaggaaagattaagattacacataataagcactctgaaacaccatccaaagacaagttaagcatatcacacggagatatactcagt-at |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| || || |
|
|
| T |
51989770 |
tcaattgaaattaggaaagattaagattacacataataagcactctgaaacaccatccaaagacacgttaagcatatcacacggacatatactcggtaat |
51989671 |
T |
|
| Q |
314 |
g-tatgtatgtaatggtgctctcaaatcctctgaaaacaaaattatattatatatttacttaattgttcaagaaaggaagatgtcaatgagatccaagtg |
412 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51989670 |
gagatgtatgtaatggtgctctcaaatcctttgaaaacaaaattatattgtatatttacttaattgttcaagaaaggaagatgtcaatgagatccaagtg |
51989571 |
T |
|
| Q |
413 |
aaaagatagtgacattctgttcttgcttcgctatataaggggtaccttgtcggtgatgtaccgtgatcaatgtcttggaataactatctatattgttaaa |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
51989570 |
aaaagatagtgacattctgttcttgcttcgctatataaggggtaccttgtcggtgatgtaccgtgatcaatgtcttggaataactatctatatggttaaa |
51989471 |
T |
|
| Q |
513 |
agggaatggatgatggtttgcttcatctcac |
543 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |
|
|
| T |
51989470 |
agggaatggatgatggtttgcttcatatcac |
51989440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 68 - 275
Target Start/End: Original strand, 51996676 - 51996885
Alignment:
| Q |
68 |
taacatgagagacattcagcaagaaaatattaaaaacattacctt---aagattacaaagtgaaagttctttcaaagacttgccctttatctcaaaaaat |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| || ||| |||||||||||||| ||| || ||||| |||||||| |||||| |
|
|
| T |
51996676 |
taacatgagagacattcagcaagaaaatattaaaaatgttaccttcttaatgttattaagtgaaagttcttccaaggatttgccatttatctccaaaaat |
51996775 |
T |
|
| Q |
165 |
gcagcaattgcttcatcactgtaacgaaggaaaagttatatcattattagtcaattgaaa-ttaggaaagattaagattacacataataagcactctgaa |
263 |
Q |
| |
|
||||||||||||||||| |||||| | || ||| |||| || |||||||| ||||||||| |||||| | |||||||||||| ||||||||||||||| |
|
|
| T |
51996776 |
gcagcaattgcttcatcgctgtaatggagaaaaggttaaattattattaggcaattgaaatttaggatgggttaagattacac--aataagcactctgaa |
51996873 |
T |
|
| Q |
264 |
acaccatccaaa |
275 |
Q |
| |
|
|||||||||||| |
|
|
| T |
51996874 |
acaccatccaaa |
51996885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University